Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09805

Experiment: 1-octen-3-ol 0.7753276667 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS09795 and AZOBR_RS09800 are separated by 268 nucleotidesAZOBR_RS09800 and AZOBR_RS09805 are separated by 6 nucleotidesAZOBR_RS09805 and AZOBR_RS09810 overlap by 1 nucleotidesAZOBR_RS09810 and AZOBR_RS09815 are separated by 163 nucleotides AZOBR_RS09795: AZOBR_RS09795 - hypothetical protein, at 2,054,009 to 2,055,883 _RS09795 AZOBR_RS09800: AZOBR_RS09800 - hypothetical protein, at 2,056,152 to 2,056,484 _RS09800 AZOBR_RS09805: AZOBR_RS09805 - peptide chain release factor I, at 2,056,491 to 2,056,910 _RS09805 AZOBR_RS09810: AZOBR_RS09810 - DSBA oxidoreductase, at 2,056,910 to 2,057,563 _RS09810 AZOBR_RS09815: AZOBR_RS09815 - hypothetical protein, at 2,057,727 to 2,058,185 _RS09815 Position (kb) 2056 2057Strain fitness (log2 ratio) -1 0 1at 2055.558 kb on + strand, within AZOBR_RS09795at 2055.558 kb on + strand, within AZOBR_RS09795at 2055.559 kb on - strand, within AZOBR_RS09795at 2055.765 kb on + strandat 2055.766 kb on - strandat 2056.018 kb on + strandat 2056.019 kb on - strandat 2056.040 kb on + strandat 2056.046 kb on + strandat 2056.047 kb on - strandat 2056.047 kb on - strandat 2056.225 kb on - strand, within AZOBR_RS09800at 2056.363 kb on - strand, within AZOBR_RS09800at 2056.363 kb on - strand, within AZOBR_RS09800at 2056.482 kb on + strandat 2056.483 kb on - strandat 2056.679 kb on - strand, within AZOBR_RS09805at 2057.022 kb on + strand, within AZOBR_RS09810at 2057.397 kb on + strand, within AZOBR_RS09810at 2057.520 kb on + strandat 2057.520 kb on + strandat 2057.520 kb on + strandat 2057.520 kb on + strandat 2057.521 kb on - strandat 2057.521 kb on - strandat 2057.521 kb on - strandat 2057.564 kb on - strandat 2057.564 kb on - strandat 2057.572 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.7753276667 mM
remove
2,055,558 + AZOBR_RS09795 0.83 -0.0
2,055,558 + AZOBR_RS09795 0.83 +0.3
2,055,559 - AZOBR_RS09795 0.83 +0.6
2,055,765 + -0.6
2,055,766 - -0.2
2,056,018 + -0.0
2,056,019 - +0.3
2,056,040 + -0.4
2,056,046 + +0.4
2,056,047 - -0.2
2,056,047 - -0.4
2,056,225 - AZOBR_RS09800 0.22 +1.0
2,056,363 - AZOBR_RS09800 0.63 -0.4
2,056,363 - AZOBR_RS09800 0.63 +0.4
2,056,482 + -1.0
2,056,483 - -0.3
2,056,679 - AZOBR_RS09805 0.45 +1.6
2,057,022 + AZOBR_RS09810 0.17 +0.4
2,057,397 + AZOBR_RS09810 0.74 -0.5
2,057,520 + +1.0
2,057,520 + +0.3
2,057,520 + +0.1
2,057,520 + -0.5
2,057,521 - -0.7
2,057,521 - +0.3
2,057,521 - +0.2
2,057,564 - +0.5
2,057,564 - +0.6
2,057,572 + +0.2

Or see this region's nucleotide sequence