Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS26440

Experiment: 1-octen-3-ol 0.7753276667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS26435 and AZOBR_RS26440 are separated by 159 nucleotidesAZOBR_RS26440 and AZOBR_RS26450 are separated by 868 nucleotides AZOBR_RS26435: AZOBR_RS26435 - ABC transporter substrate-binding protein, at 76,494 to 77,510 _RS26435 AZOBR_RS26440: AZOBR_RS26440 - transketolase, at 77,670 to 78,680 _RS26440 AZOBR_RS26450: AZOBR_RS26450 - short-chain dehydrogenase, at 79,549 to 80,298 _RS26450 Position (kb) 77 78 79Strain fitness (log2 ratio) -1 0 1at 76.828 kb on + strand, within AZOBR_RS26435at 77.153 kb on - strand, within AZOBR_RS26435at 77.153 kb on - strand, within AZOBR_RS26435at 77.153 kb on - strand, within AZOBR_RS26435at 77.401 kb on + strand, within AZOBR_RS26435at 77.401 kb on + strand, within AZOBR_RS26435at 77.402 kb on - strand, within AZOBR_RS26435at 77.402 kb on - strand, within AZOBR_RS26435at 77.584 kb on + strandat 77.671 kb on + strandat 77.672 kb on - strandat 77.672 kb on - strandat 77.720 kb on - strandat 78.083 kb on - strand, within AZOBR_RS26440at 78.088 kb on + strand, within AZOBR_RS26440at 78.134 kb on - strand, within AZOBR_RS26440at 78.134 kb on - strand, within AZOBR_RS26440at 78.268 kb on + strand, within AZOBR_RS26440at 78.350 kb on - strand, within AZOBR_RS26440at 78.350 kb on - strand, within AZOBR_RS26440at 78.377 kb on - strand, within AZOBR_RS26440at 78.460 kb on + strand, within AZOBR_RS26440at 78.505 kb on + strand, within AZOBR_RS26440at 78.506 kb on - strand, within AZOBR_RS26440at 78.506 kb on - strand, within AZOBR_RS26440at 79.015 kb on - strandat 79.083 kb on + strandat 79.084 kb on - strandat 79.188 kb on + strandat 79.188 kb on + strandat 79.189 kb on - strandat 79.189 kb on - strandat 79.285 kb on - strandat 79.300 kb on + strandat 79.301 kb on - strandat 79.301 kb on - strandat 79.423 kb on + strandat 79.598 kb on + strandat 79.598 kb on + strandat 79.599 kb on - strandat 79.599 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.7753276667 mM
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76,828 + AZOBR_RS26435 0.33 +0.1
77,153 - AZOBR_RS26435 0.65 +1.1
77,153 - AZOBR_RS26435 0.65 +0.3
77,153 - AZOBR_RS26435 0.65 -0.1
77,401 + AZOBR_RS26435 0.89 +0.5
77,401 + AZOBR_RS26435 0.89 -0.7
77,402 - AZOBR_RS26435 0.89 -0.0
77,402 - AZOBR_RS26435 0.89 +1.4
77,584 + +0.0
77,671 + -0.7
77,672 - +0.1
77,672 - -0.4
77,720 - +0.5
78,083 - AZOBR_RS26440 0.41 -0.6
78,088 + AZOBR_RS26440 0.41 +0.1
78,134 - AZOBR_RS26440 0.46 -0.5
78,134 - AZOBR_RS26440 0.46 -0.9
78,268 + AZOBR_RS26440 0.59 -0.3
78,350 - AZOBR_RS26440 0.67 +0.1
78,350 - AZOBR_RS26440 0.67 +0.4
78,377 - AZOBR_RS26440 0.70 -0.9
78,460 + AZOBR_RS26440 0.78 +0.4
78,505 + AZOBR_RS26440 0.83 +0.9
78,506 - AZOBR_RS26440 0.83 +0.3
78,506 - AZOBR_RS26440 0.83 -0.0
79,015 - -0.7
79,083 + -0.4
79,084 - +0.2
79,188 + -0.9
79,188 + +0.2
79,189 - +1.1
79,189 - -0.4
79,285 - +1.1
79,300 + +0.1
79,301 - +0.8
79,301 - +0.2
79,423 + -0.2
79,598 + -0.2
79,598 + +0.2
79,599 - +0.4
79,599 - -0.1

Or see this region's nucleotide sequence