Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS20320

Experiment: 1-octen-3-ol 0.7753276667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS20315 and AZOBR_RS20320 are separated by 202 nucleotidesAZOBR_RS20320 and AZOBR_RS20325 are separated by 317 nucleotides AZOBR_RS20315: AZOBR_RS20315 - cold-shock protein, at 1,326,914 to 1,327,492 _RS20315 AZOBR_RS20320: AZOBR_RS20320 - carboxyl-terminal protease, at 1,327,695 to 1,329,143 _RS20320 AZOBR_RS20325: AZOBR_RS20325 - UDP-phosphate galactose phosphotransferase, at 1,329,461 to 1,330,063 _RS20325 Position (kb) 1327 1328 1329 1330Strain fitness (log2 ratio) -2 -1 0 1at 1326.747 kb on - strandat 1327.590 kb on - strandat 1328.026 kb on - strand, within AZOBR_RS20320at 1328.177 kb on + strand, within AZOBR_RS20320at 1328.179 kb on + strand, within AZOBR_RS20320at 1328.401 kb on + strand, within AZOBR_RS20320at 1328.402 kb on - strandat 1328.402 kb on - strand, within AZOBR_RS20320at 1328.402 kb on - strand, within AZOBR_RS20320at 1328.758 kb on + strand, within AZOBR_RS20320at 1328.792 kb on - strand, within AZOBR_RS20320at 1328.974 kb on + strand, within AZOBR_RS20320at 1328.975 kb on - strand, within AZOBR_RS20320at 1328.975 kb on - strand, within AZOBR_RS20320at 1329.211 kb on - strandat 1329.211 kb on - strandat 1329.211 kb on - strandat 1329.319 kb on + strandat 1329.319 kb on + strandat 1329.319 kb on + strandat 1329.320 kb on - strandat 1329.387 kb on + strandat 1329.387 kb on + strandat 1329.387 kb on + strandat 1329.387 kb on + strandat 1329.388 kb on - strandat 1329.392 kb on + strandat 1329.392 kb on + strandat 1329.392 kb on + strandat 1329.392 kb on + strandat 1329.392 kb on + strandat 1329.392 kb on + strandat 1329.393 kb on - strandat 1329.393 kb on - strandat 1329.393 kb on - strandat 1329.393 kb on - strandat 1329.393 kb on - strandat 1329.393 kb on - strandat 1329.393 kb on - strandat 1329.455 kb on + strandat 1329.456 kb on - strandat 1329.466 kb on - strandat 1329.466 kb on - strandat 1329.466 kb on - strandat 1329.546 kb on + strand, within AZOBR_RS20325at 1329.546 kb on + strand, within AZOBR_RS20325at 1329.547 kb on - strand, within AZOBR_RS20325at 1329.547 kb on - strand, within AZOBR_RS20325at 1329.576 kb on + strand, within AZOBR_RS20325at 1329.639 kb on + strand, within AZOBR_RS20325at 1329.640 kb on - strand, within AZOBR_RS20325

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.7753276667 mM
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1,326,747 - +1.6
1,327,590 - -0.2
1,328,026 - AZOBR_RS20320 0.23 +0.1
1,328,177 + AZOBR_RS20320 0.33 -0.1
1,328,179 + AZOBR_RS20320 0.33 -0.5
1,328,401 + AZOBR_RS20320 0.49 -0.2
1,328,402 - +0.1
1,328,402 - AZOBR_RS20320 0.49 -0.3
1,328,402 - AZOBR_RS20320 0.49 -0.0
1,328,758 + AZOBR_RS20320 0.73 -1.2
1,328,792 - AZOBR_RS20320 0.76 -0.1
1,328,974 + AZOBR_RS20320 0.88 -0.4
1,328,975 - AZOBR_RS20320 0.88 -0.5
1,328,975 - AZOBR_RS20320 0.88 +0.4
1,329,211 - -0.2
1,329,211 - -0.1
1,329,211 - +0.2
1,329,319 + +0.3
1,329,319 + -1.5
1,329,319 + -0.1
1,329,320 - +0.2
1,329,387 + +0.5
1,329,387 + -0.0
1,329,387 + +0.4
1,329,387 + -0.4
1,329,388 - +0.2
1,329,392 + -1.6
1,329,392 + +0.1
1,329,392 + -0.3
1,329,392 + +0.3
1,329,392 + -0.3
1,329,392 + +0.0
1,329,393 - -1.1
1,329,393 - +0.8
1,329,393 - -0.2
1,329,393 - -0.2
1,329,393 - -0.1
1,329,393 - -0.0
1,329,393 - -0.2
1,329,455 + +1.4
1,329,456 - +0.0
1,329,466 - -0.0
1,329,466 - -0.1
1,329,466 - -0.1
1,329,546 + AZOBR_RS20325 0.14 +0.8
1,329,546 + AZOBR_RS20325 0.14 +0.4
1,329,547 - AZOBR_RS20325 0.14 -0.8
1,329,547 - AZOBR_RS20325 0.14 -2.1
1,329,576 + AZOBR_RS20325 0.19 +1.6
1,329,639 + AZOBR_RS20325 0.30 -0.1
1,329,640 - AZOBR_RS20325 0.30 -0.2

Or see this region's nucleotide sequence