Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS20300

Experiment: 1-octen-3-ol 0.7753276667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS20295 and AZOBR_RS20300 are separated by 90 nucleotidesAZOBR_RS20300 and AZOBR_RS20305 are separated by 107 nucleotidesAZOBR_RS20305 and AZOBR_RS20310 are separated by 169 nucleotides AZOBR_RS20295: AZOBR_RS20295 - modification methylase, at 1,323,383 to 1,324,468 _RS20295 AZOBR_RS20300: AZOBR_RS20300 - ribonuclease HII, at 1,324,559 to 1,325,173 _RS20300 AZOBR_RS20305: AZOBR_RS20305 - cAMP-binding protein, at 1,325,281 to 1,326,003 _RS20305 AZOBR_RS20310: AZOBR_RS20310 - hypothetical protein, at 1,326,173 to 1,326,670 _RS20310 Position (kb) 1324 1325 1326Strain fitness (log2 ratio) -3 -2 -1 0 1at 1324.687 kb on - strand, within AZOBR_RS20300at 1324.876 kb on - strand, within AZOBR_RS20300at 1325.297 kb on + strandat 1325.297 kb on + strandat 1325.298 kb on - strandat 1325.298 kb on - strandat 1325.519 kb on + strand, within AZOBR_RS20305at 1325.519 kb on + strand, within AZOBR_RS20305at 1325.696 kb on + strand, within AZOBR_RS20305at 1325.697 kb on - strand, within AZOBR_RS20305at 1325.697 kb on - strand, within AZOBR_RS20305at 1325.697 kb on - strand, within AZOBR_RS20305at 1326.044 kb on - strandat 1326.051 kb on - strandat 1326.138 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.7753276667 mM
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1,324,687 - AZOBR_RS20300 0.21 +0.4
1,324,876 - AZOBR_RS20300 0.52 -1.3
1,325,297 + -2.8
1,325,297 + -0.4
1,325,298 - +0.2
1,325,298 - +1.0
1,325,519 + AZOBR_RS20305 0.33 +0.1
1,325,519 + AZOBR_RS20305 0.33 -0.4
1,325,696 + AZOBR_RS20305 0.57 -0.7
1,325,697 - AZOBR_RS20305 0.58 -0.1
1,325,697 - AZOBR_RS20305 0.58 -0.4
1,325,697 - AZOBR_RS20305 0.58 -0.1
1,326,044 - -0.1
1,326,051 - -0.4
1,326,138 - -0.4

Or see this region's nucleotide sequence