Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS11680

Experiment: 1-octen-3-ol 0.7753276667 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS11675 and AZOBR_RS11680 are separated by 245 nucleotidesAZOBR_RS11680 and AZOBR_RS11685 are separated by 201 nucleotides AZOBR_RS11675: AZOBR_RS11675 - N-acetylglucosamine 6-phosphate deacetylase, at 2,441,659 to 2,442,810 _RS11675 AZOBR_RS11680: AZOBR_RS11680 - hypothetical protein, at 2,443,056 to 2,443,256 _RS11680 AZOBR_RS11685: AZOBR_RS11685 - hypothetical protein, at 2,443,458 to 2,444,357 _RS11685 Position (kb) 2443 2444Strain fitness (log2 ratio) -1 0 1at 2442.843 kb on + strandat 2442.843 kb on + strandat 2442.845 kb on + strandat 2442.872 kb on - strandat 2442.891 kb on + strandat 2442.892 kb on - strandat 2442.892 kb on - strandat 2443.181 kb on + strand, within AZOBR_RS11680at 2443.267 kb on - strandat 2443.304 kb on + strandat 2443.305 kb on - strandat 2443.415 kb on + strandat 2443.416 kb on - strandat 2443.493 kb on + strandat 2443.493 kb on + strandat 2443.585 kb on + strand, within AZOBR_RS11685at 2443.585 kb on + strand, within AZOBR_RS11685at 2443.586 kb on - strand, within AZOBR_RS11685at 2443.586 kb on - strand, within AZOBR_RS11685

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.7753276667 mM
remove
2,442,843 + +1.1
2,442,843 + +0.2
2,442,845 + +0.4
2,442,872 - -0.4
2,442,891 + -1.7
2,442,892 - +0.4
2,442,892 - +0.6
2,443,181 + AZOBR_RS11680 0.62 -1.1
2,443,267 - -0.1
2,443,304 + +0.7
2,443,305 - -0.0
2,443,415 + +0.2
2,443,416 - +0.0
2,443,493 + -0.3
2,443,493 + +0.5
2,443,585 + AZOBR_RS11685 0.14 -0.1
2,443,585 + AZOBR_RS11685 0.14 -0.1
2,443,586 - AZOBR_RS11685 0.14 -0.3
2,443,586 - AZOBR_RS11685 0.14 -0.0

Or see this region's nucleotide sequence