Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09685

Experiment: 1-octen-3-ol 0.7753276667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS09680 and AZOBR_RS09685 are separated by 305 nucleotidesAZOBR_RS09685 and AZOBR_RS09690 are separated by 145 nucleotidesAZOBR_RS09690 and AZOBR_RS09695 are separated by 55 nucleotides AZOBR_RS09680: AZOBR_RS09680 - N-acetylglucosamine-1-phosphate uridyltransferase, at 2,029,931 to 2,031,286 _RS09680 AZOBR_RS09685: AZOBR_RS09685 - phosphoglycolate phosphatase, at 2,031,592 to 2,032,272 _RS09685 AZOBR_RS09690: AZOBR_RS09690 - hypothetical protein, at 2,032,418 to 2,032,696 _RS09690 AZOBR_RS09695: AZOBR_RS09695 - hypothetical protein, at 2,032,752 to 2,033,486 _RS09695 Position (kb) 2031 2032 2033Strain fitness (log2 ratio) -1 0 1at 2031.303 kb on - strandat 2031.457 kb on + strandat 2031.457 kb on + strandat 2031.457 kb on + strandat 2031.458 kb on - strandat 2031.458 kb on - strandat 2031.458 kb on - strandat 2031.458 kb on - strandat 2031.489 kb on + strandat 2031.490 kb on - strandat 2031.490 kb on - strandat 2031.490 kb on - strandat 2031.542 kb on + strandat 2031.554 kb on + strandat 2031.842 kb on - strand, within AZOBR_RS09685at 2031.854 kb on - strand, within AZOBR_RS09685at 2032.132 kb on - strand, within AZOBR_RS09685at 2032.174 kb on + strand, within AZOBR_RS09685at 2032.174 kb on + strand, within AZOBR_RS09685at 2032.174 kb on + strand, within AZOBR_RS09685at 2032.175 kb on - strand, within AZOBR_RS09685at 2032.175 kb on - strand, within AZOBR_RS09685at 2032.175 kb on - strand, within AZOBR_RS09685at 2032.175 kb on - strand, within AZOBR_RS09685at 2032.175 kb on - strand, within AZOBR_RS09685at 2032.176 kb on - strand, within AZOBR_RS09685at 2032.346 kb on + strandat 2032.346 kb on + strandat 2032.346 kb on + strandat 2032.366 kb on + strandat 2032.367 kb on - strandat 2032.511 kb on - strand, within AZOBR_RS09690at 2032.655 kb on + strand, within AZOBR_RS09690at 2032.655 kb on + strand, within AZOBR_RS09690at 2032.656 kb on - strand, within AZOBR_RS09690at 2032.656 kb on - strand, within AZOBR_RS09690at 2033.021 kb on - strand, within AZOBR_RS09695at 2033.038 kb on + strand, within AZOBR_RS09695at 2033.038 kb on + strand, within AZOBR_RS09695at 2033.039 kb on - strand, within AZOBR_RS09695at 2033.039 kb on - strand, within AZOBR_RS09695at 2033.039 kb on - strand, within AZOBR_RS09695at 2033.039 kb on - strand, within AZOBR_RS09695at 2033.039 kb on - strand, within AZOBR_RS09695at 2033.258 kb on + strand, within AZOBR_RS09695

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.7753276667 mM
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2,031,303 - -0.8
2,031,457 + -0.5
2,031,457 + -1.0
2,031,457 + +0.4
2,031,458 - -0.4
2,031,458 - +0.7
2,031,458 - +1.2
2,031,458 - +0.5
2,031,489 + -1.1
2,031,490 - -0.6
2,031,490 - +0.5
2,031,490 - -0.5
2,031,542 + +1.4
2,031,554 + +0.3
2,031,842 - AZOBR_RS09685 0.37 +0.4
2,031,854 - AZOBR_RS09685 0.38 +0.0
2,032,132 - AZOBR_RS09685 0.79 +0.6
2,032,174 + AZOBR_RS09685 0.85 -0.9
2,032,174 + AZOBR_RS09685 0.85 +0.1
2,032,174 + AZOBR_RS09685 0.85 +0.3
2,032,175 - AZOBR_RS09685 0.86 +0.3
2,032,175 - AZOBR_RS09685 0.86 +0.7
2,032,175 - AZOBR_RS09685 0.86 -0.1
2,032,175 - AZOBR_RS09685 0.86 +1.0
2,032,175 - AZOBR_RS09685 0.86 -1.6
2,032,176 - AZOBR_RS09685 0.86 +0.0
2,032,346 + +0.2
2,032,346 + -0.9
2,032,346 + +0.4
2,032,366 + -0.1
2,032,367 - -1.2
2,032,511 - AZOBR_RS09690 0.33 -0.1
2,032,655 + AZOBR_RS09690 0.85 +0.2
2,032,655 + AZOBR_RS09690 0.85 +0.2
2,032,656 - AZOBR_RS09690 0.85 -0.0
2,032,656 - AZOBR_RS09690 0.85 +0.3
2,033,021 - AZOBR_RS09695 0.37 -0.0
2,033,038 + AZOBR_RS09695 0.39 -0.2
2,033,038 + AZOBR_RS09695 0.39 +0.6
2,033,039 - AZOBR_RS09695 0.39 +0.3
2,033,039 - AZOBR_RS09695 0.39 -0.0
2,033,039 - AZOBR_RS09695 0.39 -1.0
2,033,039 - AZOBR_RS09695 0.39 +0.4
2,033,039 - AZOBR_RS09695 0.39 +1.0
2,033,258 + AZOBR_RS09695 0.69 -0.6

Or see this region's nucleotide sequence