Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS04850

Experiment: 1-octen-3-ol 0.7753276667 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS04845 and AZOBR_RS04850 are separated by 12 nucleotidesAZOBR_RS04850 and AZOBR_RS04855 overlap by 4 nucleotidesAZOBR_RS04855 and AZOBR_RS04860 are separated by 45 nucleotidesAZOBR_RS04860 and AZOBR_RS04865 overlap by 4 nucleotides AZOBR_RS04845: AZOBR_RS04845 - hypothetical protein, at 1,020,073 to 1,021,017 _RS04845 AZOBR_RS04850: AZOBR_RS04850 - cytochrome C oxidase, at 1,021,030 to 1,022,967 _RS04850 AZOBR_RS04855: AZOBR_RS04855 - cytochrome C oxidase subunit III, at 1,022,964 to 1,023,572 _RS04855 AZOBR_RS04860: AZOBR_RS04860 - hypothetical protein, at 1,023,618 to 1,023,935 _RS04860 AZOBR_RS04865: AZOBR_RS04865 - conserved exported protein of unknown function, at 1,023,932 to 1,024,345 _RS04865 Position (kb) 1021 1022 1023Strain fitness (log2 ratio) -2 -1 0 1 2at 1020.151 kb on + strandat 1020.152 kb on - strandat 1020.152 kb on - strandat 1020.322 kb on + strand, within AZOBR_RS04845at 1020.322 kb on + strand, within AZOBR_RS04845at 1020.322 kb on + strand, within AZOBR_RS04845at 1020.323 kb on - strand, within AZOBR_RS04845at 1020.886 kb on + strand, within AZOBR_RS04845at 1020.997 kb on + strandat 1020.997 kb on + strandat 1020.998 kb on - strandat 1021.292 kb on - strand, within AZOBR_RS04850at 1021.370 kb on - strand, within AZOBR_RS04850at 1021.441 kb on + strand, within AZOBR_RS04850at 1021.442 kb on - strand, within AZOBR_RS04850at 1021.442 kb on - strand, within AZOBR_RS04850at 1021.513 kb on + strand, within AZOBR_RS04850at 1021.514 kb on - strand, within AZOBR_RS04850at 1021.514 kb on - strand, within AZOBR_RS04850at 1021.514 kb on - strand, within AZOBR_RS04850at 1021.538 kb on - strand, within AZOBR_RS04850at 1021.858 kb on + strand, within AZOBR_RS04850at 1021.858 kb on + strand, within AZOBR_RS04850at 1021.858 kb on + strand, within AZOBR_RS04850at 1021.858 kb on + strand, within AZOBR_RS04850at 1021.858 kb on + strand, within AZOBR_RS04850at 1021.858 kb on + strand, within AZOBR_RS04850at 1021.858 kb on + strand, within AZOBR_RS04850at 1021.858 kb on + strand, within AZOBR_RS04850at 1021.859 kb on - strand, within AZOBR_RS04850at 1021.859 kb on - strand, within AZOBR_RS04850at 1021.859 kb on - strand, within AZOBR_RS04850at 1021.859 kb on - strand, within AZOBR_RS04850at 1021.859 kb on - strand, within AZOBR_RS04850at 1021.859 kb on - strand, within AZOBR_RS04850at 1022.164 kb on - strand, within AZOBR_RS04850at 1022.236 kb on + strand, within AZOBR_RS04850at 1022.236 kb on + strand, within AZOBR_RS04850at 1022.236 kb on + strand, within AZOBR_RS04850at 1022.236 kb on + strand, within AZOBR_RS04850at 1022.237 kb on - strand, within AZOBR_RS04850at 1022.237 kb on - strand, within AZOBR_RS04850at 1022.260 kb on + strand, within AZOBR_RS04850at 1022.305 kb on + strand, within AZOBR_RS04850at 1022.305 kb on + strand, within AZOBR_RS04850at 1022.305 kb on + strand, within AZOBR_RS04850at 1022.305 kb on + strand, within AZOBR_RS04850at 1022.305 kb on + strand, within AZOBR_RS04850at 1022.306 kb on - strand, within AZOBR_RS04850at 1022.452 kb on + strand, within AZOBR_RS04850at 1022.453 kb on - strand, within AZOBR_RS04850at 1022.638 kb on + strand, within AZOBR_RS04850at 1022.638 kb on + strand, within AZOBR_RS04850at 1022.639 kb on - strand, within AZOBR_RS04850at 1022.654 kb on + strand, within AZOBR_RS04850at 1022.654 kb on + strand, within AZOBR_RS04850at 1022.655 kb on - strand, within AZOBR_RS04850at 1022.663 kb on + strand, within AZOBR_RS04850at 1022.663 kb on + strand, within AZOBR_RS04850at 1022.664 kb on - strand, within AZOBR_RS04850at 1022.741 kb on + strand, within AZOBR_RS04850at 1022.741 kb on + strand, within AZOBR_RS04850at 1022.741 kb on + strand, within AZOBR_RS04850at 1022.742 kb on - strand, within AZOBR_RS04850at 1022.742 kb on - strand, within AZOBR_RS04850at 1023.099 kb on + strand, within AZOBR_RS04855at 1023.099 kb on + strand, within AZOBR_RS04855at 1023.099 kb on + strand, within AZOBR_RS04855at 1023.100 kb on - strand, within AZOBR_RS04855at 1023.100 kb on - strand, within AZOBR_RS04855at 1023.100 kb on - strand, within AZOBR_RS04855at 1023.100 kb on - strand, within AZOBR_RS04855at 1023.100 kb on - strand, within AZOBR_RS04855at 1023.105 kb on + strand, within AZOBR_RS04855at 1023.105 kb on + strand, within AZOBR_RS04855at 1023.106 kb on - strand, within AZOBR_RS04855at 1023.106 kb on - strand, within AZOBR_RS04855at 1023.355 kb on - strand, within AZOBR_RS04855at 1023.502 kb on - strand, within AZOBR_RS04855at 1023.537 kb on + strandat 1023.537 kb on + strandat 1023.537 kb on + strandat 1023.538 kb on - strandat 1023.538 kb on - strandat 1023.549 kb on + strandat 1023.549 kb on + strandat 1023.550 kb on - strandat 1023.550 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.7753276667 mM
remove
1,020,151 + -0.1
1,020,152 - +0.4
1,020,152 - -0.5
1,020,322 + AZOBR_RS04845 0.26 -0.3
1,020,322 + AZOBR_RS04845 0.26 -0.0
1,020,322 + AZOBR_RS04845 0.26 -0.1
1,020,323 - AZOBR_RS04845 0.26 -0.0
1,020,886 + AZOBR_RS04845 0.86 -0.8
1,020,997 + +0.1
1,020,997 + +0.2
1,020,998 - -0.2
1,021,292 - AZOBR_RS04850 0.14 -1.3
1,021,370 - AZOBR_RS04850 0.18 -0.8
1,021,441 + AZOBR_RS04850 0.21 -0.1
1,021,442 - AZOBR_RS04850 0.21 -0.4
1,021,442 - AZOBR_RS04850 0.21 -0.2
1,021,513 + AZOBR_RS04850 0.25 +0.3
1,021,514 - AZOBR_RS04850 0.25 -0.9
1,021,514 - AZOBR_RS04850 0.25 -0.4
1,021,514 - AZOBR_RS04850 0.25 +0.1
1,021,538 - AZOBR_RS04850 0.26 +0.1
1,021,858 + AZOBR_RS04850 0.43 +0.8
1,021,858 + AZOBR_RS04850 0.43 +0.6
1,021,858 + AZOBR_RS04850 0.43 +0.8
1,021,858 + AZOBR_RS04850 0.43 -0.6
1,021,858 + AZOBR_RS04850 0.43 -0.1
1,021,858 + AZOBR_RS04850 0.43 -0.0
1,021,858 + AZOBR_RS04850 0.43 -0.4
1,021,858 + AZOBR_RS04850 0.43 -0.8
1,021,859 - AZOBR_RS04850 0.43 -0.6
1,021,859 - AZOBR_RS04850 0.43 -0.2
1,021,859 - AZOBR_RS04850 0.43 -0.0
1,021,859 - AZOBR_RS04850 0.43 -0.5
1,021,859 - AZOBR_RS04850 0.43 -0.1
1,021,859 - AZOBR_RS04850 0.43 -1.5
1,022,164 - AZOBR_RS04850 0.59 -0.1
1,022,236 + AZOBR_RS04850 0.62 +0.8
1,022,236 + AZOBR_RS04850 0.62 +1.8
1,022,236 + AZOBR_RS04850 0.62 +0.1
1,022,236 + AZOBR_RS04850 0.62 +0.4
1,022,237 - AZOBR_RS04850 0.62 -0.2
1,022,237 - AZOBR_RS04850 0.62 +0.4
1,022,260 + AZOBR_RS04850 0.63 +0.1
1,022,305 + AZOBR_RS04850 0.66 -0.0
1,022,305 + AZOBR_RS04850 0.66 -0.1
1,022,305 + AZOBR_RS04850 0.66 +0.1
1,022,305 + AZOBR_RS04850 0.66 -2.0
1,022,305 + AZOBR_RS04850 0.66 -0.4
1,022,306 - AZOBR_RS04850 0.66 -1.2
1,022,452 + AZOBR_RS04850 0.73 -0.6
1,022,453 - AZOBR_RS04850 0.73 +0.1
1,022,638 + AZOBR_RS04850 0.83 -0.5
1,022,638 + AZOBR_RS04850 0.83 +0.1
1,022,639 - AZOBR_RS04850 0.83 -0.1
1,022,654 + AZOBR_RS04850 0.84 -0.9
1,022,654 + AZOBR_RS04850 0.84 -0.3
1,022,655 - AZOBR_RS04850 0.84 -0.7
1,022,663 + AZOBR_RS04850 0.84 -0.6
1,022,663 + AZOBR_RS04850 0.84 -0.1
1,022,664 - AZOBR_RS04850 0.84 -0.4
1,022,741 + AZOBR_RS04850 0.88 +0.1
1,022,741 + AZOBR_RS04850 0.88 +0.2
1,022,741 + AZOBR_RS04850 0.88 +0.1
1,022,742 - AZOBR_RS04850 0.88 +0.1
1,022,742 - AZOBR_RS04850 0.88 -0.1
1,023,099 + AZOBR_RS04855 0.22 -0.3
1,023,099 + AZOBR_RS04855 0.22 -0.6
1,023,099 + AZOBR_RS04855 0.22 +0.3
1,023,100 - AZOBR_RS04855 0.22 +0.3
1,023,100 - AZOBR_RS04855 0.22 -0.5
1,023,100 - AZOBR_RS04855 0.22 +1.1
1,023,100 - AZOBR_RS04855 0.22 -0.1
1,023,100 - AZOBR_RS04855 0.22 +0.1
1,023,105 + AZOBR_RS04855 0.23 -0.4
1,023,105 + AZOBR_RS04855 0.23 -0.3
1,023,106 - AZOBR_RS04855 0.23 +0.2
1,023,106 - AZOBR_RS04855 0.23 -0.6
1,023,355 - AZOBR_RS04855 0.64 -1.2
1,023,502 - AZOBR_RS04855 0.88 -0.3
1,023,537 + -1.4
1,023,537 + -0.2
1,023,537 + -0.1
1,023,538 - -0.2
1,023,538 - +1.0
1,023,549 + -0.1
1,023,549 + +0.2
1,023,550 - +1.2
1,023,550 - +0.1

Or see this region's nucleotide sequence