Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS01725

Experiment: 1-octen-3-ol 0.7753276667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS01715 and AZOBR_RS01720 are separated by 217 nucleotidesAZOBR_RS01720 and AZOBR_RS01725 are separated by 140 nucleotides AZOBR_RS01715: AZOBR_RS01715 - exlusion protein FxsA, at 349,741 to 350,241 _RS01715 AZOBR_RS01720: AZOBR_RS01720 - preprotein translocase subunit SecB, at 350,459 to 350,956 _RS01720 AZOBR_RS01725: AZOBR_RS01725 - transcription termination factor Rho, at 351,097 to 352,353 _RS01725 Position (kb) 351 352 353Strain fitness (log2 ratio) -1 0 1at 350.222 kb on - strandat 350.399 kb on + strandat 350.400 kb on - strandat 350.531 kb on + strand, within AZOBR_RS01720at 350.531 kb on + strand, within AZOBR_RS01720at 350.532 kb on - strand, within AZOBR_RS01720at 350.651 kb on + strand, within AZOBR_RS01720at 350.651 kb on + strand, within AZOBR_RS01720at 350.652 kb on - strand, within AZOBR_RS01720at 350.724 kb on - strand, within AZOBR_RS01720at 351.099 kb on - strandat 352.655 kb on + strandat 352.957 kb on + strandat 352.957 kb on + strandat 352.957 kb on + strandat 352.957 kb on + strandat 352.957 kb on + strandat 352.958 kb on - strandat 352.958 kb on - strandat 353.058 kb on - strandat 353.254 kb on + strandat 353.255 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.7753276667 mM
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350,222 - -0.3
350,399 + +0.6
350,400 - +0.0
350,531 + AZOBR_RS01720 0.14 -0.7
350,531 + AZOBR_RS01720 0.14 -0.4
350,532 - AZOBR_RS01720 0.15 -0.4
350,651 + AZOBR_RS01720 0.39 -0.1
350,651 + AZOBR_RS01720 0.39 +1.5
350,652 - AZOBR_RS01720 0.39 -0.1
350,724 - AZOBR_RS01720 0.53 -0.4
351,099 - +0.1
352,655 + +0.1
352,957 + -0.2
352,957 + +0.1
352,957 + -0.3
352,957 + -0.9
352,957 + -0.2
352,958 - +1.5
352,958 - -0.4
353,058 - -1.1
353,254 + -0.2
353,255 - -0.7

Or see this region's nucleotide sequence