Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS22130

Experiment: 6-Pentyl-2H-pyran-2-one 0.5570485 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS22125 and AZOBR_RS22130 are separated by 3 nucleotidesAZOBR_RS22130 and AZOBR_RS22135 are separated by 172 nucleotides AZOBR_RS22125: AZOBR_RS22125 - secretion protein, at 1,729,206 to 1,730,339 _RS22125 AZOBR_RS22130: AZOBR_RS22130 - acriflavin resistance protein, at 1,730,343 to 1,733,465 _RS22130 AZOBR_RS22135: AZOBR_RS22135 - transglutaminase, at 1,733,638 to 1,734,591 _RS22135 Position (kb) 1730 1731 1732 1733 1734Strain fitness (log2 ratio) -2 -1 0 1 2at 1729.893 kb on + strand, within AZOBR_RS22125at 1729.893 kb on + strand, within AZOBR_RS22125at 1729.894 kb on - strand, within AZOBR_RS22125at 1729.894 kb on - strand, within AZOBR_RS22125at 1729.894 kb on - strand, within AZOBR_RS22125at 1729.894 kb on - strand, within AZOBR_RS22125at 1729.974 kb on + strand, within AZOBR_RS22125at 1729.974 kb on + strand, within AZOBR_RS22125at 1729.974 kb on + strand, within AZOBR_RS22125at 1730.493 kb on + strandat 1730.493 kb on + strandat 1730.494 kb on - strandat 1730.494 kb on - strandat 1730.494 kb on - strandat 1730.760 kb on + strand, within AZOBR_RS22130at 1730.760 kb on + strand, within AZOBR_RS22130at 1730.760 kb on + strand, within AZOBR_RS22130at 1730.760 kb on + strand, within AZOBR_RS22130at 1731.094 kb on - strand, within AZOBR_RS22130at 1731.094 kb on - strand, within AZOBR_RS22130at 1731.095 kb on + strand, within AZOBR_RS22130at 1731.096 kb on - strand, within AZOBR_RS22130at 1731.096 kb on - strand, within AZOBR_RS22130at 1731.096 kb on - strand, within AZOBR_RS22130at 1731.096 kb on - strand, within AZOBR_RS22130at 1731.096 kb on - strand, within AZOBR_RS22130at 1731.096 kb on - strand, within AZOBR_RS22130at 1731.472 kb on - strand, within AZOBR_RS22130at 1731.570 kb on + strand, within AZOBR_RS22130at 1731.571 kb on - strand, within AZOBR_RS22130at 1731.571 kb on - strand, within AZOBR_RS22130at 1731.837 kb on + strand, within AZOBR_RS22130at 1731.958 kb on - strand, within AZOBR_RS22130at 1731.958 kb on - strand, within AZOBR_RS22130at 1732.068 kb on + strand, within AZOBR_RS22130at 1732.069 kb on - strand, within AZOBR_RS22130at 1732.341 kb on + strand, within AZOBR_RS22130at 1732.632 kb on + strand, within AZOBR_RS22130at 1732.632 kb on + strand, within AZOBR_RS22130at 1732.632 kb on + strand, within AZOBR_RS22130at 1732.632 kb on + strand, within AZOBR_RS22130at 1732.633 kb on - strand, within AZOBR_RS22130at 1732.633 kb on - strand, within AZOBR_RS22130at 1732.633 kb on - strand, within AZOBR_RS22130at 1732.827 kb on + strand, within AZOBR_RS22130at 1732.827 kb on + strand, within AZOBR_RS22130at 1732.878 kb on + strand, within AZOBR_RS22130at 1732.879 kb on - strand, within AZOBR_RS22130at 1732.879 kb on - strand, within AZOBR_RS22130at 1732.879 kb on - strand, within AZOBR_RS22130at 1732.923 kb on + strand, within AZOBR_RS22130at 1732.924 kb on - strand, within AZOBR_RS22130at 1732.956 kb on + strand, within AZOBR_RS22130at 1732.956 kb on + strand, within AZOBR_RS22130at 1732.956 kb on + strand, within AZOBR_RS22130at 1732.956 kb on + strand, within AZOBR_RS22130at 1732.957 kb on - strand, within AZOBR_RS22130at 1732.957 kb on - strand, within AZOBR_RS22130at 1732.957 kb on - strand, within AZOBR_RS22130at 1732.957 kb on - strand, within AZOBR_RS22130at 1732.957 kb on - strand, within AZOBR_RS22130at 1732.957 kb on - strand, within AZOBR_RS22130at 1732.957 kb on - strand, within AZOBR_RS22130at 1733.079 kb on + strand, within AZOBR_RS22130at 1733.079 kb on + strand, within AZOBR_RS22130at 1733.382 kb on + strandat 1733.382 kb on + strandat 1733.382 kb on + strandat 1733.382 kb on + strandat 1733.382 kb on + strandat 1733.382 kb on + strandat 1733.382 kb on + strandat 1733.383 kb on - strandat 1733.918 kb on + strand, within AZOBR_RS22135at 1733.930 kb on + strand, within AZOBR_RS22135at 1734.189 kb on - strand, within AZOBR_RS22135at 1734.356 kb on + strand, within AZOBR_RS22135at 1734.356 kb on + strand, within AZOBR_RS22135at 1734.356 kb on + strand, within AZOBR_RS22135at 1734.357 kb on - strand, within AZOBR_RS22135at 1734.357 kb on - strand, within AZOBR_RS22135at 1734.377 kb on + strand, within AZOBR_RS22135at 1734.377 kb on + strand, within AZOBR_RS22135at 1734.378 kb on - strand, within AZOBR_RS22135

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.5570485 mM
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1,729,893 + AZOBR_RS22125 0.61 +0.0
1,729,893 + AZOBR_RS22125 0.61 -0.4
1,729,894 - AZOBR_RS22125 0.61 -1.9
1,729,894 - AZOBR_RS22125 0.61 -0.3
1,729,894 - AZOBR_RS22125 0.61 -0.3
1,729,894 - AZOBR_RS22125 0.61 -0.0
1,729,974 + AZOBR_RS22125 0.68 -1.5
1,729,974 + AZOBR_RS22125 0.68 -0.2
1,729,974 + AZOBR_RS22125 0.68 -0.9
1,730,493 + +0.5
1,730,493 + +0.5
1,730,494 - -2.1
1,730,494 - -0.6
1,730,494 - +0.1
1,730,760 + AZOBR_RS22130 0.13 -0.2
1,730,760 + AZOBR_RS22130 0.13 -0.4
1,730,760 + AZOBR_RS22130 0.13 +0.5
1,730,760 + AZOBR_RS22130 0.13 -0.1
1,731,094 - AZOBR_RS22130 0.24 +0.1
1,731,094 - AZOBR_RS22130 0.24 +0.3
1,731,095 + AZOBR_RS22130 0.24 -0.1
1,731,096 - AZOBR_RS22130 0.24 +0.1
1,731,096 - AZOBR_RS22130 0.24 -0.2
1,731,096 - AZOBR_RS22130 0.24 -0.1
1,731,096 - AZOBR_RS22130 0.24 +0.2
1,731,096 - AZOBR_RS22130 0.24 -0.0
1,731,096 - AZOBR_RS22130 0.24 +0.3
1,731,472 - AZOBR_RS22130 0.36 +0.4
1,731,570 + AZOBR_RS22130 0.39 +0.6
1,731,571 - AZOBR_RS22130 0.39 -0.0
1,731,571 - AZOBR_RS22130 0.39 +0.1
1,731,837 + AZOBR_RS22130 0.48 +0.9
1,731,958 - AZOBR_RS22130 0.52 -0.7
1,731,958 - AZOBR_RS22130 0.52 +0.6
1,732,068 + AZOBR_RS22130 0.55 -0.0
1,732,069 - AZOBR_RS22130 0.55 -1.1
1,732,341 + AZOBR_RS22130 0.64 +0.1
1,732,632 + AZOBR_RS22130 0.73 +0.0
1,732,632 + AZOBR_RS22130 0.73 -0.9
1,732,632 + AZOBR_RS22130 0.73 +0.0
1,732,632 + AZOBR_RS22130 0.73 +0.1
1,732,633 - AZOBR_RS22130 0.73 -0.2
1,732,633 - AZOBR_RS22130 0.73 +0.0
1,732,633 - AZOBR_RS22130 0.73 +0.2
1,732,827 + AZOBR_RS22130 0.80 +0.4
1,732,827 + AZOBR_RS22130 0.80 +0.1
1,732,878 + AZOBR_RS22130 0.81 -0.2
1,732,879 - AZOBR_RS22130 0.81 -0.2
1,732,879 - AZOBR_RS22130 0.81 -1.2
1,732,879 - AZOBR_RS22130 0.81 -1.0
1,732,923 + AZOBR_RS22130 0.83 -0.5
1,732,924 - AZOBR_RS22130 0.83 +0.0
1,732,956 + AZOBR_RS22130 0.84 -0.0
1,732,956 + AZOBR_RS22130 0.84 -0.1
1,732,956 + AZOBR_RS22130 0.84 -0.7
1,732,956 + AZOBR_RS22130 0.84 +0.5
1,732,957 - AZOBR_RS22130 0.84 +0.4
1,732,957 - AZOBR_RS22130 0.84 +0.2
1,732,957 - AZOBR_RS22130 0.84 -0.2
1,732,957 - AZOBR_RS22130 0.84 -0.6
1,732,957 - AZOBR_RS22130 0.84 +1.9
1,732,957 - AZOBR_RS22130 0.84 -0.3
1,732,957 - AZOBR_RS22130 0.84 -0.6
1,733,079 + AZOBR_RS22130 0.88 -0.1
1,733,079 + AZOBR_RS22130 0.88 -0.2
1,733,382 + -0.4
1,733,382 + -0.1
1,733,382 + -0.1
1,733,382 + +1.1
1,733,382 + +0.0
1,733,382 + -0.3
1,733,382 + +0.4
1,733,383 - -1.1
1,733,918 + AZOBR_RS22135 0.29 +0.6
1,733,930 + AZOBR_RS22135 0.31 +0.7
1,734,189 - AZOBR_RS22135 0.58 +0.4
1,734,356 + AZOBR_RS22135 0.75 +0.4
1,734,356 + AZOBR_RS22135 0.75 -0.5
1,734,356 + AZOBR_RS22135 0.75 +0.6
1,734,357 - AZOBR_RS22135 0.75 +0.7
1,734,357 - AZOBR_RS22135 0.75 -0.6
1,734,377 + AZOBR_RS22135 0.77 -0.8
1,734,377 + AZOBR_RS22135 0.77 -0.3
1,734,378 - AZOBR_RS22135 0.78 +0.0

Or see this region's nucleotide sequence