Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS18135

Experiment: 6-Pentyl-2H-pyran-2-one 0.5570485 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS18130 and AZOBR_RS18135 are separated by 250 nucleotides AZOBR_RS18130: AZOBR_RS18130 - TonB-denpendent receptor, at 823,627 to 826,128 _RS18130 AZOBR_RS18135: AZOBR_RS18135 - LacI family transcription regulator, at 826,379 to 827,440 _RS18135 Position (kb) 826 827 828Strain fitness (log2 ratio) -1 0 1at 825.518 kb on + strand, within AZOBR_RS18130at 825.518 kb on + strand, within AZOBR_RS18130at 825.518 kb on + strand, within AZOBR_RS18130at 825.519 kb on - strand, within AZOBR_RS18130at 825.519 kb on - strand, within AZOBR_RS18130at 826.292 kb on + strandat 826.360 kb on - strandat 826.546 kb on - strand, within AZOBR_RS18135at 827.082 kb on + strandat 827.083 kb on - strand, within AZOBR_RS18135at 827.245 kb on - strand, within AZOBR_RS18135at 827.441 kb on + strandat 827.455 kb on + strandat 827.592 kb on - strandat 827.671 kb on + strandat 827.672 kb on - strandat 828.242 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.5570485 mM
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825,518 + AZOBR_RS18130 0.76 +0.2
825,518 + AZOBR_RS18130 0.76 -0.2
825,518 + AZOBR_RS18130 0.76 +0.4
825,519 - AZOBR_RS18130 0.76 +0.5
825,519 - AZOBR_RS18130 0.76 +0.0
826,292 + -0.8
826,360 - -0.8
826,546 - AZOBR_RS18135 0.16 +0.8
827,082 + -1.4
827,083 - AZOBR_RS18135 0.66 -0.5
827,245 - AZOBR_RS18135 0.82 -0.1
827,441 + -0.3
827,455 + -0.0
827,592 - +0.0
827,671 + -0.4
827,672 - -0.4
828,242 + -0.2

Or see this region's nucleotide sequence