Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS12250

Experiment: 6-Pentyl-2H-pyran-2-one 0.5570485 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS12245 and AZOBR_RS12250 are separated by 124 nucleotidesAZOBR_RS12250 and AZOBR_RS12255 are separated by 321 nucleotides AZOBR_RS12245: AZOBR_RS12245 - 5-oxoprolinase, at 2,569,648 to 2,573,256 _RS12245 AZOBR_RS12250: AZOBR_RS12250 - GCN5 family acetyltransferase, at 2,573,381 to 2,573,935 _RS12250 AZOBR_RS12255: AZOBR_RS12255 - molecular chaperone DnaJ, at 2,574,257 to 2,574,994 _RS12255 Position (kb) 2573 2574Strain fitness (log2 ratio) -1 0 1at 2572.580 kb on + strand, within AZOBR_RS12245at 2572.580 kb on + strand, within AZOBR_RS12245at 2572.604 kb on + strand, within AZOBR_RS12245at 2572.605 kb on - strand, within AZOBR_RS12245at 2572.605 kb on - strand, within AZOBR_RS12245at 2572.784 kb on + strand, within AZOBR_RS12245at 2572.884 kb on - strand, within AZOBR_RS12245at 2573.314 kb on - strandat 2573.314 kb on - strandat 2573.314 kb on - strandat 2573.417 kb on + strandat 2574.192 kb on - strandat 2574.579 kb on - strand, within AZOBR_RS12255at 2574.579 kb on - strand, within AZOBR_RS12255

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.5570485 mM
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2,572,580 + AZOBR_RS12245 0.81 +0.8
2,572,580 + AZOBR_RS12245 0.81 +0.3
2,572,604 + AZOBR_RS12245 0.82 -0.1
2,572,605 - AZOBR_RS12245 0.82 +0.2
2,572,605 - AZOBR_RS12245 0.82 -0.1
2,572,784 + AZOBR_RS12245 0.87 -0.2
2,572,884 - AZOBR_RS12245 0.90 +0.2
2,573,314 - -0.2
2,573,314 - -0.1
2,573,314 - +0.4
2,573,417 + -0.2
2,574,192 - +0.2
2,574,579 - AZOBR_RS12255 0.44 +1.2
2,574,579 - AZOBR_RS12255 0.44 +0.5

Or see this region's nucleotide sequence