Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09430

Experiment: 6-Pentyl-2H-pyran-2-one 0.5570485 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS09430 and AZOBR_RS09435 overlap by 7 nucleotidesAZOBR_RS09435 and AZOBR_RS09440 are separated by 99 nucleotides AZOBR_RS09430: AZOBR_RS09430 - rhamnosyltransferase, at 1,971,454 to 1,972,251 _RS09430 AZOBR_RS09435: AZOBR_RS09435 - 3'-5'-bisphosphate nucleotidase, at 1,972,245 to 1,973,018 _RS09435 AZOBR_RS09440: AZOBR_RS09440 - N-acetyltransferase GCN5, at 1,973,118 to 1,973,636 _RS09440 Position (kb) 1971 1972 1973Strain fitness (log2 ratio) -2 -1 0 1at 1970.461 kb on + strandat 1970.461 kb on + strandat 1970.617 kb on + strandat 1970.617 kb on + strandat 1970.618 kb on - strandat 1970.672 kb on - strandat 1970.998 kb on + strandat 1971.100 kb on + strandat 1971.292 kb on + strandat 1971.293 kb on - strandat 1971.301 kb on + strandat 1971.301 kb on + strandat 1971.447 kb on - strandat 1971.447 kb on - strandat 1971.473 kb on + strandat 1971.473 kb on + strandat 1971.546 kb on - strand, within AZOBR_RS09430at 1971.546 kb on - strand, within AZOBR_RS09430at 1971.839 kb on + strand, within AZOBR_RS09430at 1972.169 kb on + strand, within AZOBR_RS09430at 1972.256 kb on - strandat 1972.256 kb on - strandat 1972.256 kb on - strandat 1972.256 kb on - strandat 1972.400 kb on - strand, within AZOBR_RS09435at 1972.474 kb on + strand, within AZOBR_RS09435at 1972.475 kb on - strand, within AZOBR_RS09435at 1972.936 kb on + strand, within AZOBR_RS09435at 1972.936 kb on + strand, within AZOBR_RS09435at 1973.058 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.5570485 mM
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1,970,461 + +0.3
1,970,461 + -0.7
1,970,617 + -0.2
1,970,617 + +0.2
1,970,618 - +0.3
1,970,672 - +0.4
1,970,998 + -0.1
1,971,100 + -0.8
1,971,292 + -0.4
1,971,293 - +0.4
1,971,301 + -0.5
1,971,301 + -0.3
1,971,447 - +0.3
1,971,447 - +0.8
1,971,473 + -0.4
1,971,473 + +0.5
1,971,546 - AZOBR_RS09430 0.12 -0.1
1,971,546 - AZOBR_RS09430 0.12 -0.9
1,971,839 + AZOBR_RS09430 0.48 -0.4
1,972,169 + AZOBR_RS09430 0.90 -0.1
1,972,256 - -1.1
1,972,256 - -0.6
1,972,256 - -1.1
1,972,256 - -0.9
1,972,400 - AZOBR_RS09435 0.20 -1.1
1,972,474 + AZOBR_RS09435 0.30 -0.5
1,972,475 - AZOBR_RS09435 0.30 -1.3
1,972,936 + AZOBR_RS09435 0.89 -2.3
1,972,936 + AZOBR_RS09435 0.89 -0.4
1,973,058 + -0.1

Or see this region's nucleotide sequence