Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS31320

Experiment: 6-Pentyl-2H-pyran-2-one 0.5570485 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS31315 and AZOBR_RS31320 are separated by 10 nucleotidesAZOBR_RS31320 and AZOBR_RS31325 are separated by 80 nucleotides AZOBR_RS31315: AZOBR_RS31315 - RND transporter, at 391,528 to 392,724 _RS31315 AZOBR_RS31320: AZOBR_RS31320 - acriflavine resistance protein B, at 392,735 to 395,812 _RS31320 AZOBR_RS31325: AZOBR_RS31325 - NmrA family transcriptional regulator, at 395,893 to 396,741 _RS31325 Position (kb) 392 393 394 395 396Strain fitness (log2 ratio) -2 -1 0 1 2at 391.771 kb on + strand, within AZOBR_RS31315at 391.771 kb on + strand, within AZOBR_RS31315at 391.771 kb on + strand, within AZOBR_RS31315at 391.772 kb on - strand, within AZOBR_RS31315at 391.772 kb on - strand, within AZOBR_RS31315at 392.152 kb on + strand, within AZOBR_RS31315at 392.153 kb on - strand, within AZOBR_RS31315at 392.153 kb on - strand, within AZOBR_RS31315at 392.473 kb on + strand, within AZOBR_RS31315at 392.474 kb on - strand, within AZOBR_RS31315at 392.474 kb on - strand, within AZOBR_RS31315at 392.482 kb on + strand, within AZOBR_RS31315at 392.843 kb on + strandat 392.885 kb on + strandat 392.885 kb on + strandat 392.969 kb on + strandat 392.969 kb on + strandat 392.969 kb on + strandat 392.969 kb on + strandat 392.969 kb on + strandat 392.969 kb on + strandat 392.969 kb on + strandat 392.969 kb on + strandat 392.969 kb on + strandat 393.014 kb on + strandat 393.015 kb on - strandat 393.015 kb on - strandat 393.083 kb on + strand, within AZOBR_RS31320at 393.083 kb on + strand, within AZOBR_RS31320at 393.083 kb on + strand, within AZOBR_RS31320at 393.084 kb on - strand, within AZOBR_RS31320at 393.152 kb on + strand, within AZOBR_RS31320at 393.152 kb on + strand, within AZOBR_RS31320at 393.152 kb on + strand, within AZOBR_RS31320at 393.152 kb on + strand, within AZOBR_RS31320at 393.152 kb on + strand, within AZOBR_RS31320at 393.153 kb on - strand, within AZOBR_RS31320at 393.201 kb on - strand, within AZOBR_RS31320at 393.201 kb on - strand, within AZOBR_RS31320at 393.368 kb on + strand, within AZOBR_RS31320at 393.369 kb on - strand, within AZOBR_RS31320at 394.448 kb on + strand, within AZOBR_RS31320at 394.460 kb on + strand, within AZOBR_RS31320at 394.733 kb on + strand, within AZOBR_RS31320at 394.733 kb on + strand, within AZOBR_RS31320at 394.734 kb on - strand, within AZOBR_RS31320at 394.928 kb on + strand, within AZOBR_RS31320at 394.928 kb on + strand, within AZOBR_RS31320at 394.928 kb on + strand, within AZOBR_RS31320at 394.928 kb on + strand, within AZOBR_RS31320at 394.928 kb on + strand, within AZOBR_RS31320at 394.928 kb on + strand, within AZOBR_RS31320at 394.928 kb on + strand, within AZOBR_RS31320at 394.929 kb on - strand, within AZOBR_RS31320at 394.929 kb on - strand, within AZOBR_RS31320at 394.929 kb on - strand, within AZOBR_RS31320at 394.929 kb on - strand, within AZOBR_RS31320at 394.929 kb on - strand, within AZOBR_RS31320at 394.929 kb on - strandat 394.929 kb on - strand, within AZOBR_RS31320at 394.962 kb on - strand, within AZOBR_RS31320at 394.962 kb on - strand, within AZOBR_RS31320at 395.022 kb on - strand, within AZOBR_RS31320at 395.024 kb on + strand, within AZOBR_RS31320at 395.024 kb on + strand, within AZOBR_RS31320at 395.024 kb on + strand, within AZOBR_RS31320at 395.024 kb on + strand, within AZOBR_RS31320at 395.024 kb on + strand, within AZOBR_RS31320at 395.024 kb on + strand, within AZOBR_RS31320at 395.024 kb on + strand, within AZOBR_RS31320at 395.111 kb on + strand, within AZOBR_RS31320at 395.111 kb on + strand, within AZOBR_RS31320at 395.112 kb on - strand, within AZOBR_RS31320at 395.235 kb on - strand, within AZOBR_RS31320at 395.255 kb on + strand, within AZOBR_RS31320at 395.255 kb on + strand, within AZOBR_RS31320at 395.255 kb on + strand, within AZOBR_RS31320at 395.255 kb on + strand, within AZOBR_RS31320at 395.255 kb on + strand, within AZOBR_RS31320at 395.312 kb on + strand, within AZOBR_RS31320at 395.312 kb on + strand, within AZOBR_RS31320at 395.312 kb on + strand, within AZOBR_RS31320at 395.313 kb on - strand, within AZOBR_RS31320at 395.313 kb on - strand, within AZOBR_RS31320at 395.313 kb on - strand, within AZOBR_RS31320at 395.313 kb on - strand, within AZOBR_RS31320at 395.313 kb on - strand, within AZOBR_RS31320at 395.313 kb on - strand, within AZOBR_RS31320at 395.435 kb on + strand, within AZOBR_RS31320at 395.435 kb on + strand, within AZOBR_RS31320at 395.435 kb on + strand, within AZOBR_RS31320at 395.435 kb on + strand, within AZOBR_RS31320at 395.735 kb on + strandat 395.827 kb on + strandat 396.068 kb on + strand, within AZOBR_RS31325at 396.068 kb on + strand, within AZOBR_RS31325at 396.227 kb on + strand, within AZOBR_RS31325at 396.330 kb on - strand, within AZOBR_RS31325at 396.447 kb on - strand, within AZOBR_RS31325at 396.590 kb on + strand, within AZOBR_RS31325at 396.779 kb on + strandat 396.779 kb on + strandat 396.780 kb on - strandat 396.780 kb on - strandat 396.783 kb on + strandat 396.783 kb on + strandat 396.784 kb on - strandat 396.784 kb on - strandat 396.784 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.5570485 mM
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391,771 + AZOBR_RS31315 0.20 -0.3
391,771 + AZOBR_RS31315 0.20 -0.4
391,771 + AZOBR_RS31315 0.20 -1.3
391,772 - AZOBR_RS31315 0.20 +0.3
391,772 - AZOBR_RS31315 0.20 -0.6
392,152 + AZOBR_RS31315 0.52 +1.1
392,153 - AZOBR_RS31315 0.52 -1.2
392,153 - AZOBR_RS31315 0.52 -0.3
392,473 + AZOBR_RS31315 0.79 -1.0
392,474 - AZOBR_RS31315 0.79 -0.2
392,474 - AZOBR_RS31315 0.79 +0.2
392,482 + AZOBR_RS31315 0.80 +1.5
392,843 + -0.2
392,885 + -0.2
392,885 + -1.1
392,969 + +0.2
392,969 + +0.0
392,969 + +2.1
392,969 + +0.5
392,969 + +0.4
392,969 + +0.5
392,969 + +0.2
392,969 + +0.6
392,969 + -0.4
393,014 + -0.8
393,015 - -0.5
393,015 - +1.1
393,083 + AZOBR_RS31320 0.11 -0.2
393,083 + AZOBR_RS31320 0.11 -0.6
393,083 + AZOBR_RS31320 0.11 -0.3
393,084 - AZOBR_RS31320 0.11 -0.1
393,152 + AZOBR_RS31320 0.14 +0.2
393,152 + AZOBR_RS31320 0.14 -0.5
393,152 + AZOBR_RS31320 0.14 +0.5
393,152 + AZOBR_RS31320 0.14 -1.5
393,152 + AZOBR_RS31320 0.14 -0.9
393,153 - AZOBR_RS31320 0.14 +0.3
393,201 - AZOBR_RS31320 0.15 +0.1
393,201 - AZOBR_RS31320 0.15 -0.1
393,368 + AZOBR_RS31320 0.21 -2.1
393,369 - AZOBR_RS31320 0.21 -0.1
394,448 + AZOBR_RS31320 0.56 +0.4
394,460 + AZOBR_RS31320 0.56 -0.2
394,733 + AZOBR_RS31320 0.65 -0.1
394,733 + AZOBR_RS31320 0.65 -0.3
394,734 - AZOBR_RS31320 0.65 -0.1
394,928 + AZOBR_RS31320 0.71 -0.6
394,928 + AZOBR_RS31320 0.71 +0.5
394,928 + AZOBR_RS31320 0.71 -0.1
394,928 + AZOBR_RS31320 0.71 -0.3
394,928 + AZOBR_RS31320 0.71 -0.1
394,928 + AZOBR_RS31320 0.71 -0.8
394,928 + AZOBR_RS31320 0.71 -0.6
394,929 - AZOBR_RS31320 0.71 +0.5
394,929 - AZOBR_RS31320 0.71 -0.5
394,929 - AZOBR_RS31320 0.71 -0.3
394,929 - AZOBR_RS31320 0.71 -1.1
394,929 - AZOBR_RS31320 0.71 +0.1
394,929 - +1.1
394,929 - AZOBR_RS31320 0.71 -0.7
394,962 - AZOBR_RS31320 0.72 +0.3
394,962 - AZOBR_RS31320 0.72 -0.5
395,022 - AZOBR_RS31320 0.74 -0.2
395,024 + AZOBR_RS31320 0.74 -0.2
395,024 + AZOBR_RS31320 0.74 -0.6
395,024 + AZOBR_RS31320 0.74 -0.1
395,024 + AZOBR_RS31320 0.74 -0.2
395,024 + AZOBR_RS31320 0.74 -0.4
395,024 + AZOBR_RS31320 0.74 -0.2
395,024 + AZOBR_RS31320 0.74 -1.1
395,111 + AZOBR_RS31320 0.77 -0.3
395,111 + AZOBR_RS31320 0.77 +0.2
395,112 - AZOBR_RS31320 0.77 -1.2
395,235 - AZOBR_RS31320 0.81 +0.1
395,255 + AZOBR_RS31320 0.82 -0.4
395,255 + AZOBR_RS31320 0.82 -0.2
395,255 + AZOBR_RS31320 0.82 +1.4
395,255 + AZOBR_RS31320 0.82 -0.6
395,255 + AZOBR_RS31320 0.82 -0.5
395,312 + AZOBR_RS31320 0.84 +0.1
395,312 + AZOBR_RS31320 0.84 +0.2
395,312 + AZOBR_RS31320 0.84 +0.1
395,313 - AZOBR_RS31320 0.84 -0.7
395,313 - AZOBR_RS31320 0.84 -0.8
395,313 - AZOBR_RS31320 0.84 -0.4
395,313 - AZOBR_RS31320 0.84 -0.2
395,313 - AZOBR_RS31320 0.84 -0.0
395,313 - AZOBR_RS31320 0.84 -2.0
395,435 + AZOBR_RS31320 0.88 +0.1
395,435 + AZOBR_RS31320 0.88 -0.8
395,435 + AZOBR_RS31320 0.88 -0.2
395,435 + AZOBR_RS31320 0.88 -0.2
395,735 + -0.7
395,827 + +1.0
396,068 + AZOBR_RS31325 0.21 +0.7
396,068 + AZOBR_RS31325 0.21 -0.2
396,227 + AZOBR_RS31325 0.39 +0.0
396,330 - AZOBR_RS31325 0.51 +0.1
396,447 - AZOBR_RS31325 0.65 -0.4
396,590 + AZOBR_RS31325 0.82 +0.0
396,779 + +0.2
396,779 + -0.1
396,780 - -0.2
396,780 - -0.4
396,783 + +0.7
396,783 + -0.8
396,784 - +0.6
396,784 - -0.7
396,784 - -0.4

Or see this region's nucleotide sequence