Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS30710

Experiment: 6-Pentyl-2H-pyran-2-one 0.5570485 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS30705 and AZOBR_RS30710 overlap by 11 nucleotidesAZOBR_RS30710 and AZOBR_RS30715 are separated by 228 nucleotidesAZOBR_RS30715 and AZOBR_RS30720 are separated by 339 nucleotides AZOBR_RS30705: AZOBR_RS30705 - alpha/beta hydrolase, at 249,069 to 250,070 _RS30705 AZOBR_RS30710: AZOBR_RS30710 - multidrug ABC transporter ATP-binding protein, at 250,060 to 251,040 _RS30710 AZOBR_RS30715: AZOBR_RS30715 - hypothetical protein, at 251,269 to 251,451 _RS30715 AZOBR_RS30720: AZOBR_RS30720 - diguanylate cyclase, at 251,791 to 253,854 _RS30720 Position (kb) 250 251 252Strain fitness (log2 ratio) -2 -1 0 1at 249.071 kb on - strandat 249.071 kb on - strandat 249.071 kb on - strandat 249.071 kb on - strandat 249.208 kb on + strand, within AZOBR_RS30705at 249.502 kb on + strand, within AZOBR_RS30705at 249.502 kb on + strand, within AZOBR_RS30705at 249.503 kb on - strand, within AZOBR_RS30705at 249.851 kb on - strand, within AZOBR_RS30705at 249.851 kb on - strand, within AZOBR_RS30705at 249.992 kb on - strandat 249.992 kb on - strandat 249.992 kb on - strandat 250.062 kb on - strandat 250.430 kb on + strand, within AZOBR_RS30710at 250.431 kb on - strand, within AZOBR_RS30710at 250.431 kb on - strand, within AZOBR_RS30710at 250.616 kb on + strand, within AZOBR_RS30710at 250.617 kb on - strand, within AZOBR_RS30710at 250.691 kb on + strand, within AZOBR_RS30710at 250.944 kb on + strandat 250.982 kb on + strandat 250.982 kb on + strandat 250.983 kb on - strandat 250.983 kb on - strandat 251.180 kb on - strandat 251.353 kb on + strand, within AZOBR_RS30715at 251.468 kb on + strandat 251.468 kb on + strandat 251.468 kb on + strandat 251.468 kb on + strandat 251.469 kb on - strandat 251.616 kb on + strandat 251.616 kb on + strandat 251.617 kb on - strandat 251.686 kb on + strandat 251.848 kb on - strandat 251.848 kb on - strandat 251.848 kb on - strandat 251.851 kb on + strandat 251.851 kb on + strandat 251.852 kb on - strandat 251.876 kb on - strandat 251.908 kb on + strandat 251.908 kb on + strandat 251.908 kb on + strandat 251.908 kb on + strandat 251.909 kb on - strandat 251.909 kb on - strandat 251.909 kb on - strandat 251.933 kb on + strandat 251.968 kb on + strandat 251.968 kb on + strandat 251.969 kb on - strandat 251.969 kb on - strandat 251.969 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.5570485 mM
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249,071 - -0.4
249,071 - +0.6
249,071 - -0.5
249,071 - +1.5
249,208 + AZOBR_RS30705 0.14 -0.3
249,502 + AZOBR_RS30705 0.43 -0.2
249,502 + AZOBR_RS30705 0.43 -0.7
249,503 - AZOBR_RS30705 0.43 +0.1
249,851 - AZOBR_RS30705 0.78 +0.2
249,851 - AZOBR_RS30705 0.78 -0.2
249,992 - -1.1
249,992 - +0.4
249,992 - -0.7
250,062 - -0.0
250,430 + AZOBR_RS30710 0.38 +0.7
250,431 - AZOBR_RS30710 0.38 +0.2
250,431 - AZOBR_RS30710 0.38 +0.3
250,616 + AZOBR_RS30710 0.57 -0.0
250,617 - AZOBR_RS30710 0.57 -0.5
250,691 + AZOBR_RS30710 0.64 +0.1
250,944 + +0.3
250,982 + -0.2
250,982 + -0.2
250,983 - +0.4
250,983 - -0.5
251,180 - +1.3
251,353 + AZOBR_RS30715 0.46 -1.2
251,468 + -0.3
251,468 + -0.4
251,468 + -1.1
251,468 + -0.6
251,469 - -0.2
251,616 + -1.4
251,616 + -1.6
251,617 - +0.0
251,686 + +1.1
251,848 - +0.5
251,848 - +0.1
251,848 - +1.1
251,851 + -1.0
251,851 + -1.4
251,852 - -1.1
251,876 - +0.4
251,908 + +0.9
251,908 + -0.5
251,908 + -0.3
251,908 + -2.3
251,909 - +0.7
251,909 - +0.1
251,909 - +0.8
251,933 + +0.0
251,968 + -0.4
251,968 + +0.3
251,969 - +0.2
251,969 - +0.5
251,969 - +0.0

Or see this region's nucleotide sequence