Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS26810

Experiment: 6-Pentyl-2H-pyran-2-one 0.5570485 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS26805 and AZOBR_RS26810 are separated by 60 nucleotidesAZOBR_RS26810 and AZOBR_RS26815 are separated by 173 nucleotides AZOBR_RS26805: AZOBR_RS26805 - malonyl-CoA synthase, at 163,231 to 164,769 _RS26805 AZOBR_RS26810: AZOBR_RS26810 - quinone oxidoreductase, at 164,830 to 165,810 _RS26810 AZOBR_RS26815: AZOBR_RS26815 - 3-hydroxyisobutyrate dehydrogenase, at 165,984 to 166,883 _RS26815 Position (kb) 164 165 166Strain fitness (log2 ratio) -1 0 1at 164.003 kb on + strand, within AZOBR_RS26805at 164.004 kb on - strand, within AZOBR_RS26805at 164.102 kb on + strand, within AZOBR_RS26805at 164.102 kb on + strand, within AZOBR_RS26805at 164.102 kb on + strand, within AZOBR_RS26805at 164.102 kb on + strand, within AZOBR_RS26805at 164.102 kb on + strand, within AZOBR_RS26805at 164.103 kb on - strand, within AZOBR_RS26805at 164.103 kb on - strand, within AZOBR_RS26805at 164.103 kb on - strand, within AZOBR_RS26805at 164.103 kb on - strand, within AZOBR_RS26805at 164.103 kb on - strand, within AZOBR_RS26805at 164.276 kb on + strand, within AZOBR_RS26805at 164.471 kb on + strand, within AZOBR_RS26805at 164.471 kb on + strand, within AZOBR_RS26805at 164.492 kb on + strand, within AZOBR_RS26805at 164.493 kb on - strand, within AZOBR_RS26805at 164.493 kb on - strand, within AZOBR_RS26805at 164.514 kb on - strand, within AZOBR_RS26805at 164.543 kb on + strand, within AZOBR_RS26805at 164.543 kb on + strand, within AZOBR_RS26805at 164.660 kb on + strandat 164.753 kb on + strandat 165.168 kb on - strand, within AZOBR_RS26810at 165.168 kb on - strand, within AZOBR_RS26810at 165.168 kb on - strand, within AZOBR_RS26810at 165.420 kb on - strand, within AZOBR_RS26810at 165.420 kb on - strand, within AZOBR_RS26810at 165.674 kb on + strand, within AZOBR_RS26810at 165.674 kb on + strand, within AZOBR_RS26810at 165.675 kb on - strand, within AZOBR_RS26810at 165.675 kb on - strand, within AZOBR_RS26810at 165.947 kb on - strandat 165.958 kb on + strandat 165.959 kb on - strandat 165.959 kb on - strandat 165.970 kb on + strandat 165.970 kb on + strandat 165.970 kb on + strandat 165.971 kb on - strandat 166.070 kb on - strandat 166.070 kb on - strandat 166.180 kb on + strand, within AZOBR_RS26815at 166.180 kb on + strand, within AZOBR_RS26815at 166.228 kb on + strand, within AZOBR_RS26815at 166.228 kb on + strand, within AZOBR_RS26815at 166.228 kb on + strand, within AZOBR_RS26815at 166.228 kb on + strand, within AZOBR_RS26815at 166.228 kb on + strand, within AZOBR_RS26815at 166.229 kb on - strand, within AZOBR_RS26815at 166.229 kb on - strand, within AZOBR_RS26815at 166.229 kb on - strand, within AZOBR_RS26815at 166.276 kb on + strand, within AZOBR_RS26815at 166.276 kb on + strand, within AZOBR_RS26815at 166.276 kb on + strand, within AZOBR_RS26815at 166.277 kb on - strand, within AZOBR_RS26815at 166.660 kb on + strand, within AZOBR_RS26815

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.5570485 mM
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164,003 + AZOBR_RS26805 0.50 +0.3
164,004 - AZOBR_RS26805 0.50 +0.8
164,102 + AZOBR_RS26805 0.57 +0.3
164,102 + AZOBR_RS26805 0.57 -1.1
164,102 + AZOBR_RS26805 0.57 +0.0
164,102 + AZOBR_RS26805 0.57 +1.5
164,102 + AZOBR_RS26805 0.57 +0.1
164,103 - AZOBR_RS26805 0.57 -0.3
164,103 - AZOBR_RS26805 0.57 +0.2
164,103 - AZOBR_RS26805 0.57 +1.1
164,103 - AZOBR_RS26805 0.57 +1.3
164,103 - AZOBR_RS26805 0.57 +0.4
164,276 + AZOBR_RS26805 0.68 +0.1
164,471 + AZOBR_RS26805 0.81 +0.3
164,471 + AZOBR_RS26805 0.81 +0.5
164,492 + AZOBR_RS26805 0.82 -1.1
164,493 - AZOBR_RS26805 0.82 -0.2
164,493 - AZOBR_RS26805 0.82 -0.6
164,514 - AZOBR_RS26805 0.83 +0.9
164,543 + AZOBR_RS26805 0.85 +0.2
164,543 + AZOBR_RS26805 0.85 +1.2
164,660 + +0.0
164,753 + +0.2
165,168 - AZOBR_RS26810 0.34 -0.4
165,168 - AZOBR_RS26810 0.34 -0.4
165,168 - AZOBR_RS26810 0.34 -0.3
165,420 - AZOBR_RS26810 0.60 -0.0
165,420 - AZOBR_RS26810 0.60 +0.1
165,674 + AZOBR_RS26810 0.86 +0.4
165,674 + AZOBR_RS26810 0.86 +0.7
165,675 - AZOBR_RS26810 0.86 -0.5
165,675 - AZOBR_RS26810 0.86 -0.1
165,947 - +0.1
165,958 + -0.1
165,959 - +0.1
165,959 - -0.3
165,970 + +0.6
165,970 + +0.5
165,970 + +0.0
165,971 - -0.4
166,070 - -0.4
166,070 - -0.4
166,180 + AZOBR_RS26815 0.22 -0.6
166,180 + AZOBR_RS26815 0.22 -0.4
166,228 + AZOBR_RS26815 0.27 +0.2
166,228 + AZOBR_RS26815 0.27 +0.6
166,228 + AZOBR_RS26815 0.27 +0.0
166,228 + AZOBR_RS26815 0.27 -0.4
166,228 + AZOBR_RS26815 0.27 +0.9
166,229 - AZOBR_RS26815 0.27 -0.5
166,229 - AZOBR_RS26815 0.27 -0.0
166,229 - AZOBR_RS26815 0.27 -0.4
166,276 + AZOBR_RS26815 0.32 +0.7
166,276 + AZOBR_RS26815 0.32 +0.1
166,276 + AZOBR_RS26815 0.32 +0.3
166,277 - AZOBR_RS26815 0.33 -0.6
166,660 + AZOBR_RS26815 0.75 -0.2

Or see this region's nucleotide sequence