Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS15420

Experiment: 6-Pentyl-2H-pyran-2-one 0.5570485 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS15410 and AZOBR_RS15415 are separated by 68 nucleotidesAZOBR_RS15415 and AZOBR_RS15420 are separated by 86 nucleotidesAZOBR_RS15420 and AZOBR_RS15425 are separated by 27 nucleotidesAZOBR_RS15425 and AZOBR_RS15430 are separated by 12 nucleotides AZOBR_RS15410: AZOBR_RS15410 - phytoene dehydrogenase, at 219,072 to 220,388 _RS15410 AZOBR_RS15415: AZOBR_RS15415 - superoxide dismutase, at 220,457 to 221,062 _RS15415 AZOBR_RS15420: AZOBR_RS15420 - hypothetical protein, at 221,149 to 221,526 _RS15420 AZOBR_RS15425: AZOBR_RS15425 - preprotein translocase subunit SecF, at 221,554 to 222,507 _RS15425 AZOBR_RS15430: AZOBR_RS15430 - preprotein translocase subunit SecD, at 222,520 to 224,118 _RS15430 Position (kb) 221 222Strain fitness (log2 ratio) -1 0 1at 220.382 kb on + strandat 221.204 kb on + strand, within AZOBR_RS15420at 221.205 kb on - strand, within AZOBR_RS15420at 222.522 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.5570485 mM
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220,382 + +0.2
221,204 + AZOBR_RS15420 0.15 -0.5
221,205 - AZOBR_RS15420 0.15 -1.2
222,522 - +0.3

Or see this region's nucleotide sequence