Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS07320

Experiment: 6-Pentyl-2H-pyran-2-one 0.5570485 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS07305 and AZOBR_RS07310 are separated by 48 nucleotidesAZOBR_RS07310 and AZOBR_RS07315 overlap by 4 nucleotidesAZOBR_RS07315 and AZOBR_RS07320 are separated by 200 nucleotides AZOBR_RS07305: AZOBR_RS07305 - DNA polymerase III subunit alpha, at 1,539,836 to 1,543,318 _RS07305 AZOBR_RS07310: AZOBR_RS07310 - hypothetical protein, at 1,543,367 to 1,543,546 _RS07310 AZOBR_RS07315: AZOBR_RS07315 - putative plasmid stabilization system protein, at 1,543,543 to 1,543,818 _RS07315 AZOBR_RS07320: AZOBR_RS07320 - 30S ribosomal protein S2, at 1,544,019 to 1,544,804 _RS07320 Position (kb) 1544 1545Strain fitness (log2 ratio) -1 0 1at 1543.316 kb on + strandat 1543.358 kb on - strandat 1543.597 kb on + strand, within AZOBR_RS07315at 1543.597 kb on + strand, within AZOBR_RS07315at 1543.598 kb on - strand, within AZOBR_RS07315at 1543.598 kb on - strand, within AZOBR_RS07315at 1543.598 kb on - strand, within AZOBR_RS07315at 1543.598 kb on - strand, within AZOBR_RS07315at 1543.738 kb on + strand, within AZOBR_RS07315at 1543.738 kb on + strand, within AZOBR_RS07315at 1543.738 kb on + strand, within AZOBR_RS07315at 1543.738 kb on + strand, within AZOBR_RS07315at 1543.738 kb on + strand, within AZOBR_RS07315at 1543.738 kb on + strand, within AZOBR_RS07315at 1543.738 kb on + strand, within AZOBR_RS07315at 1543.739 kb on - strand, within AZOBR_RS07315

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.5570485 mM
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1,543,316 + -0.5
1,543,358 - +0.2
1,543,597 + AZOBR_RS07315 0.20 +0.0
1,543,597 + AZOBR_RS07315 0.20 +0.1
1,543,598 - AZOBR_RS07315 0.20 +0.0
1,543,598 - AZOBR_RS07315 0.20 -0.3
1,543,598 - AZOBR_RS07315 0.20 -0.1
1,543,598 - AZOBR_RS07315 0.20 -1.2
1,543,738 + AZOBR_RS07315 0.71 -0.1
1,543,738 + AZOBR_RS07315 0.71 +0.0
1,543,738 + AZOBR_RS07315 0.71 -1.5
1,543,738 + AZOBR_RS07315 0.71 -0.1
1,543,738 + AZOBR_RS07315 0.71 +0.4
1,543,738 + AZOBR_RS07315 0.71 -1.4
1,543,738 + AZOBR_RS07315 0.71 -0.7
1,543,739 - AZOBR_RS07315 0.71 -0.6

Or see this region's nucleotide sequence