Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS06180

Experiment: 6-Pentyl-2H-pyran-2-one 0.5570485 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS06175 and AZOBR_RS06180 overlap by 17 nucleotidesAZOBR_RS06180 and AZOBR_RS06185 are separated by 243 nucleotidesAZOBR_RS06185 and AZOBR_RS06190 are separated by 57 nucleotides AZOBR_RS06175: AZOBR_RS06175 - hypothetical protein, at 1,307,602 to 1,309,398 _RS06175 AZOBR_RS06180: AZOBR_RS06180 - flgE (modular protein), at 1,309,382 to 1,310,752 _RS06180 AZOBR_RS06185: AZOBR_RS06185 - carbonic anhydrase, at 1,310,996 to 1,311,688 _RS06185 AZOBR_RS06190: AZOBR_RS06190 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 1,311,746 to 1,312,339 _RS06190 Position (kb) 1309 1310 1311Strain fitness (log2 ratio) -2 -1 0 1at 1308.641 kb on - strand, within AZOBR_RS06175at 1308.788 kb on + strand, within AZOBR_RS06175at 1308.789 kb on - strand, within AZOBR_RS06175at 1308.844 kb on + strand, within AZOBR_RS06175at 1308.844 kb on + strand, within AZOBR_RS06175at 1308.845 kb on - strand, within AZOBR_RS06175at 1308.845 kb on - strand, within AZOBR_RS06175at 1308.845 kb on - strand, within AZOBR_RS06175at 1308.845 kb on - strand, within AZOBR_RS06175at 1308.845 kb on - strand, within AZOBR_RS06175at 1309.383 kb on + strandat 1309.453 kb on - strandat 1309.692 kb on + strand, within AZOBR_RS06180at 1309.693 kb on - strand, within AZOBR_RS06180at 1309.698 kb on + strand, within AZOBR_RS06180at 1309.699 kb on - strand, within AZOBR_RS06180at 1309.764 kb on + strand, within AZOBR_RS06180at 1309.764 kb on + strand, within AZOBR_RS06180at 1309.764 kb on + strand, within AZOBR_RS06180at 1309.765 kb on - strand, within AZOBR_RS06180at 1309.765 kb on - strand, within AZOBR_RS06180at 1309.765 kb on - strand, within AZOBR_RS06180at 1311.733 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.5570485 mM
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1,308,641 - AZOBR_RS06175 0.58 -0.4
1,308,788 + AZOBR_RS06175 0.66 -0.3
1,308,789 - AZOBR_RS06175 0.66 -0.6
1,308,844 + AZOBR_RS06175 0.69 -1.2
1,308,844 + AZOBR_RS06175 0.69 -0.3
1,308,845 - AZOBR_RS06175 0.69 +0.1
1,308,845 - AZOBR_RS06175 0.69 +0.2
1,308,845 - AZOBR_RS06175 0.69 -0.8
1,308,845 - AZOBR_RS06175 0.69 +0.1
1,308,845 - AZOBR_RS06175 0.69 +1.3
1,309,383 + +0.1
1,309,453 - +0.1
1,309,692 + AZOBR_RS06180 0.23 -0.6
1,309,693 - AZOBR_RS06180 0.23 -1.8
1,309,698 + AZOBR_RS06180 0.23 +0.3
1,309,699 - AZOBR_RS06180 0.23 +1.1
1,309,764 + AZOBR_RS06180 0.28 -1.8
1,309,764 + AZOBR_RS06180 0.28 +0.1
1,309,764 + AZOBR_RS06180 0.28 -0.2
1,309,765 - AZOBR_RS06180 0.28 +0.4
1,309,765 - AZOBR_RS06180 0.28 -0.5
1,309,765 - AZOBR_RS06180 0.28 -0.3
1,311,733 - +0.8

Or see this region's nucleotide sequence