Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13960

Experiment: phage 31.1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage 31.1
3,113,919	+				+1.3
3,113,919	+				-0.5
3,113,920	-				+0.3
3,113,920	-				+0.3
3,113,920	-				-0.1
3,113,952	+				-1.0
3,113,952	+				-1.5
3,113,952	+				+0.7
3,113,952	+				-2.2
3,113,952	+				+1.6
3,113,952	+				-2.4
3,113,953	-				+0.3
3,113,953	-				-1.8
3,113,953	-				+3.2
3,113,953	-				+0.2
3,113,964	+				+3.7
3,113,964	+				+2.7
3,113,964	+				-0.3
3,113,964	+				+0.7
3,113,964	+				+0.3
3,113,964	+				-2.0
3,113,965	-				+0.3
3,113,965	-				-1.1
3,113,965	-				-2.9
3,113,965	-				-1.0
3,113,965	-				-2.1
3,113,965	-				+0.7
3,113,982	+		LRK54_RS13955	0.10	-2.3
3,114,264	+		LRK54_RS13955	0.39	+0.6
3,114,264	+		LRK54_RS13955	0.39	-0.8
3,114,265	-		LRK54_RS13955	0.39	+0.2
3,114,265	-		LRK54_RS13955	0.39	-0.5
3,114,362	-		LRK54_RS13955	0.49	-1.0
3,114,362	-		LRK54_RS13955	0.49	+1.3
3,114,408	+		LRK54_RS13955	0.54	-1.0
3,114,408	+		LRK54_RS13955	0.54	+0.7
3,114,408	+		LRK54_RS13955	0.54	+0.7
3,114,408	+		LRK54_RS13955	0.54	+2.1
3,114,408	+		LRK54_RS13955	0.54	-1.5
3,114,408	+		LRK54_RS13955	0.54	-1.3
3,114,408	+		LRK54_RS13955	0.54	-1.4
3,114,408	+		LRK54_RS13955	0.54	-2.4
3,114,408	+		LRK54_RS13955	0.54	-2.0
3,114,408	+		LRK54_RS13955	0.54	-0.8
3,114,409	-		LRK54_RS13955	0.54	-2.6
3,114,409	-		LRK54_RS13955	0.54	+0.7
3,114,409	-		LRK54_RS13955	0.54	-0.3
3,114,409	-		LRK54_RS13955	0.54	+0.3
3,114,409	-		LRK54_RS13955	0.54	-0.8
3,114,409	-		LRK54_RS13955	0.54	-0.6
3,114,409	-		LRK54_RS13955	0.54	-2.5
3,114,409	-		LRK54_RS13955	0.54	-1.8
3,114,409	-		LRK54_RS13955	0.54	-2.9
3,114,409	-		LRK54_RS13955	0.54	+0.2
3,114,409	-		LRK54_RS13955	0.54	+0.3
3,114,409	-		LRK54_RS13955	0.54	-1.5
3,114,409	-		LRK54_RS13955	0.54	+0.7
3,114,409	-		LRK54_RS13955	0.54	+2.1
3,114,409	-		LRK54_RS13955	0.54	-0.7
3,114,409	-		LRK54_RS13955	0.54	-1.3
3,114,579	+		LRK54_RS13955	0.71	+0.7
3,114,579	+		LRK54_RS13955	0.71	-0.5
3,114,579	+		LRK54_RS13955	0.71	-2.3
3,114,579	+		LRK54_RS13955	0.71	+0.0
3,114,579	+		LRK54_RS13955	0.71	-0.7
3,114,579	+		LRK54_RS13955	0.71	+1.4
3,114,579	+		LRK54_RS13955	0.71	-3.4
3,114,580	-		LRK54_RS13955	0.71	+0.0
3,114,580	-		LRK54_RS13955	0.71	+0.5
3,114,580	-		LRK54_RS13955	0.71	+0.0
3,114,580	-		LRK54_RS13955	0.71	+1.3
3,114,580	-		LRK54_RS13955	0.71	-0.3
3,114,580	-		LRK54_RS13955	0.71	+2.7
3,114,594	+		LRK54_RS13955	0.73	+0.3
3,114,595	-		LRK54_RS13955	0.73	-0.3
3,114,624	+		LRK54_RS13955	0.76	-0.3
3,114,624	+		LRK54_RS13955	0.76	-1.3
3,114,624	+		LRK54_RS13955	0.76	-0.3
3,114,625	-		LRK54_RS13955	0.76	+1.8
3,114,625	-		LRK54_RS13955	0.76	-1.0
3,114,625	-		LRK54_RS13955	0.76	-1.0
3,114,625	-		LRK54_RS13955	0.76	-1.5
3,114,625	-		LRK54_RS13955	0.76	-0.7
3,114,625	-		LRK54_RS13955	0.76	-0.3
3,114,625	-		LRK54_RS13955	0.76	-1.5
3,114,625	-		LRK54_RS13955	0.76	+1.2
3,115,151	+		LRK54_RS13960	0.29	-2.3
3,115,151	+		LRK54_RS13960	0.29	+0.7
3,115,151	+		LRK54_RS13960	0.29	-1.7
3,115,151	+		LRK54_RS13960	0.29	+1.8
3,115,151	+		LRK54_RS13960	0.29	-1.8
3,115,151	+		LRK54_RS13960	0.29	+1.3
3,115,151	+		LRK54_RS13960	0.29	-2.1
3,115,151	+		LRK54_RS13960	0.29	+0.1
3,115,151	+		LRK54_RS13960	0.29	-0.3
3,115,151	+		LRK54_RS13960	0.29	+2.3
3,115,151	+		LRK54_RS13960	0.29	-2.0
3,115,151	+		LRK54_RS13960	0.29	-1.0
3,115,151	+		LRK54_RS13960	0.29	-1.5
3,115,151	+		LRK54_RS13960	0.29	+0.4
3,115,152	-		LRK54_RS13960	0.29	+0.1
3,115,152	-		LRK54_RS13960	0.29	-1.3
3,115,152	-		LRK54_RS13960	0.29	-1.1
3,115,152	-		LRK54_RS13960	0.29	+1.0
3,115,152	-		LRK54_RS13960	0.29	-0.7
3,115,152	-		LRK54_RS13960	0.29	-1.3
3,115,152	-		LRK54_RS13960	0.29	-0.8
3,115,152	-		LRK54_RS13960	0.29	-2.2
3,115,152	-		LRK54_RS13960	0.29	-0.3
3,115,152	-		LRK54_RS13960	0.29	+2.3
3,115,152	-		LRK54_RS13960	0.29	+1.2
3,115,152	-		LRK54_RS13960	0.29	-1.8
3,115,232	+		LRK54_RS13960	0.37	-1.3
3,115,232	+		LRK54_RS13960	0.37	-1.4
3,115,232	+		LRK54_RS13960	0.37	-1.9
3,115,232	+		LRK54_RS13960	0.37	-0.3
3,115,232	+		LRK54_RS13960	0.37	-1.6
3,115,232	+		LRK54_RS13960	0.37	-0.8
3,115,232	+		LRK54_RS13960	0.37	-0.3
3,115,232	+		LRK54_RS13960	0.37	-1.8
3,115,232	+		LRK54_RS13960	0.37	+0.7
3,115,232	+		LRK54_RS13960	0.37	+0.2
3,115,232	+		LRK54_RS13960	0.37	-1.2
3,115,232	+		LRK54_RS13960	0.37	+0.5
3,115,232	+		LRK54_RS13960	0.37	+0.7
3,115,232	+		LRK54_RS13960	0.37	+2.7
3,115,232	+		LRK54_RS13960	0.37	-0.3
3,115,232	+		LRK54_RS13960	0.37	+1.2
3,115,233	-		LRK54_RS13960	0.37	-0.2
3,115,233	-		LRK54_RS13960	0.37	-0.8
3,115,233	-		LRK54_RS13960	0.37	+0.3
3,115,233	-		LRK54_RS13960	0.37	+0.3
3,115,233	-		LRK54_RS13960	0.37	+0.0
3,115,233	-		LRK54_RS13960	0.37	-2.3
3,115,233	-		LRK54_RS13960	0.37	+0.0
3,115,233	-		LRK54_RS13960	0.37	-2.3
3,115,233	-		LRK54_RS13960	0.37	-0.5
3,115,233	-		LRK54_RS13960	0.37	-1.8
3,115,233	-		LRK54_RS13960	0.37	+3.1
3,115,233	-		LRK54_RS13960	0.37	-0.5
3,115,233	-		LRK54_RS13960	0.37	+1.7
3,115,233	-		LRK54_RS13960	0.37	+1.3
3,115,358	+		LRK54_RS13960	0.50	+0.2
3,115,358	+		LRK54_RS13960	0.50	-1.6
3,115,359	-		LRK54_RS13960	0.50	-0.3
3,115,439	+		LRK54_RS13960	0.58	+0.0
3,115,439	+		LRK54_RS13960	0.58	-0.1
3,115,439	+		LRK54_RS13960	0.58	-0.4
3,115,439	+		LRK54_RS13960	0.58	-1.5
3,115,439	+		LRK54_RS13960	0.58	+0.3
3,115,439	+		LRK54_RS13960	0.58	+1.3
3,115,439	+		LRK54_RS13960	0.58	+0.7
3,115,439	+		LRK54_RS13960	0.58	-3.2
3,115,439	+		LRK54_RS13960	0.58	-0.4
3,115,439	+		LRK54_RS13960	0.58	+1.3
3,115,440	-		LRK54_RS13960	0.58	-1.0
3,115,440	-		LRK54_RS13960	0.58	-0.5
3,115,440	-		LRK54_RS13960	0.58	-1.3
3,115,440	-		LRK54_RS13960	0.58	-1.5
3,115,440	-		LRK54_RS13960	0.58	-2.8
3,115,440	-		LRK54_RS13960	0.58	-1.6
3,115,440	-		LRK54_RS13960	0.58	+1.0
3,115,440	-		LRK54_RS13960	0.58	+2.3
3,115,440	-		LRK54_RS13960	0.58	+2.3
3,115,440	-		LRK54_RS13960	0.58	-1.1
3,115,440	-		LRK54_RS13960	0.58	-0.3
3,115,440	-		LRK54_RS13960	0.58	+0.3
3,115,440	-		LRK54_RS13960	0.58	+0.6
3,115,702	+		LRK54_RS13960	0.84	-0.5
3,115,702	+		LRK54_RS13960	0.84	-0.1
3,115,702	+		LRK54_RS13960	0.84	-1.7
3,115,702	+		LRK54_RS13960	0.84	+0.0
3,115,702	+		LRK54_RS13960	0.84	-0.7
3,115,703	-		LRK54_RS13960	0.84	-0.7
3,115,703	-		LRK54_RS13960	0.84	+2.3
3,115,703	-		LRK54_RS13960	0.84	+2.9
3,115,703	-		LRK54_RS13960	0.84	+0.7
3,115,703	-		LRK54_RS13960	0.84	+2.3
3,115,703	-		LRK54_RS13960	0.84	+0.3
3,115,871	-				+1.9
3,115,886	+				+0.8
3,115,886	+				+0.3
3,115,886	+				+2.3
3,115,886	+				-0.9
3,115,886	+				+0.6
3,115,886	+				+1.3
3,115,887	-				-2.0
3,115,887	-				-0.5
3,115,887	-				-0.5
3,115,887	-				-1.9
3,115,887	-				+1.3
3,115,887	-				-0.7
3,115,887	-				-0.5
3,115,887	-				-0.6
3,115,887	-				-1.1
3,115,887	-				+1.5
3,115,887	-				-2.1
3,115,887	-				+1.5
3,116,309	+		LRK54_RS13965	0.36	-0.5
3,116,527	+		LRK54_RS13965	0.53	-1.3
3,116,527	+		LRK54_RS13965	0.53	-1.1
3,116,527	+		LRK54_RS13965	0.53	+0.3
3,116,527	+		LRK54_RS13965	0.53	-2.7
3,116,527	+		LRK54_RS13965	0.53	-1.8
3,116,527	+		LRK54_RS13965	0.53	-1.4
3,116,527	+		LRK54_RS13965	0.53	+0.3
3,116,528	-		LRK54_RS13965	0.53	-1.3
3,116,528	-		LRK54_RS13965	0.53	-0.9
3,116,614	-		LRK54_RS13965	0.60	+0.7
3,116,614	-		LRK54_RS13965	0.60	-1.1