Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS11315

Experiment: phage 31.1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage 31.1
2,509,254	+		LRK54_RS11305	0.37	+1.3
2,509,254	+		LRK54_RS11305	0.37	+0.2
2,509,254	+		LRK54_RS11305	0.37	-1.7
2,509,254	+		LRK54_RS11305	0.37	+1.0
2,509,254	+		LRK54_RS11305	0.37	+4.2
2,509,254	+		LRK54_RS11305	0.37	+0.0
2,509,255	-		LRK54_RS11305	0.38	-2.1
2,509,255	-		LRK54_RS11305	0.38	-0.7
2,509,255	-		LRK54_RS11305	0.38	+0.6
2,509,255	-		LRK54_RS11305	0.38	-3.2
2,509,573	-		LRK54_RS11305	0.83	+0.3
2,509,573	-		LRK54_RS11305	0.83	+1.7
2,509,573	-		LRK54_RS11305	0.83	-0.5
2,509,573	-		LRK54_RS11305	0.83	-1.4
2,509,573	-		LRK54_RS11305	0.83	-3.8
2,509,573	-		LRK54_RS11305	0.83	-0.0
2,509,629	+				-1.6
2,509,629	+				+0.3
2,509,629	+				+3.3
2,509,629	+				-1.5
2,509,629	+				-0.0
2,509,629	+				+0.7
2,509,630	-				+0.3
2,509,630	-				-2.1
2,509,630	-				+0.3
2,509,630	-				-0.9
2,509,630	-				+0.7
2,509,630	-				-0.7
2,509,630	-				+0.3
2,509,795	+				+1.7
2,509,795	+				-2.0
2,509,795	+				-1.2
2,509,795	+				-0.1
2,509,795	+				-0.3
2,509,795	+				-1.0
2,509,795	+				+0.7
2,509,795	+				-0.3
2,509,795	+				+0.7
2,509,795	+				-2.5
2,509,795	+				-0.5
2,509,796	-				-1.2
2,509,796	-				+0.3
2,509,796	-				-1.0
2,509,796	-				+2.3
2,509,796	-				+2.0
2,509,796	-				-1.2
2,509,796	-				+1.2
2,509,923	+		LRK54_RS11310	0.31	-2.7
2,509,923	+		LRK54_RS11310	0.31	+0.9
2,509,923	+		LRK54_RS11310	0.31	-0.3
2,509,923	+		LRK54_RS11310	0.31	-0.5
2,509,923	+		LRK54_RS11310	0.31	-0.9
2,509,924	-		LRK54_RS11310	0.31	-2.2
2,509,924	-		LRK54_RS11310	0.31	+1.0
2,509,924	-		LRK54_RS11310	0.31	-1.1
2,509,924	-		LRK54_RS11310	0.31	-0.4
2,509,924	-		LRK54_RS11310	0.31	-1.2
2,509,924	-		LRK54_RS11310	0.31	-3.2
2,510,381	+		LRK54_RS11315	0.23	+0.9
2,510,381	+		LRK54_RS11315	0.23	+1.7
2,510,381	+		LRK54_RS11315	0.23	-0.9
2,510,381	+		LRK54_RS11315	0.23	+0.6
2,510,381	+		LRK54_RS11315	0.23	-1.1
2,510,381	+		LRK54_RS11315	0.23	-1.5
2,510,381	+		LRK54_RS11315	0.23	-0.6
2,510,381	+		LRK54_RS11315	0.23	-0.9
2,510,381	+		LRK54_RS11315	0.23	-0.5
2,510,382	-		LRK54_RS11315	0.23	-0.0
2,510,382	-		LRK54_RS11315	0.23	-1.0
2,510,382	-		LRK54_RS11315	0.23	+0.7
2,510,382	-		LRK54_RS11315	0.23	-0.3
2,510,384	+		LRK54_RS11315	0.23	-2.2
2,510,384	+		LRK54_RS11315	0.23	-2.7
2,510,384	+		LRK54_RS11315	0.23	-0.4
2,510,384	+		LRK54_RS11315	0.23	+1.0
2,510,384	+		LRK54_RS11315	0.23	+1.3
2,510,384	+		LRK54_RS11315	0.23	+2.3
2,510,384	+		LRK54_RS11315	0.23	-0.1
2,510,384	+		LRK54_RS11315	0.23	+2.3
2,510,384	+		LRK54_RS11315	0.23	-0.8
2,510,384	+		LRK54_RS11315	0.23	-2.0
2,510,384	+		LRK54_RS11315	0.23	+0.8
2,510,384	+		LRK54_RS11315	0.23	-0.5
2,510,384	+		LRK54_RS11315	0.23	+1.0
2,510,384	+		LRK54_RS11315	0.23	+1.0
2,510,384	+		LRK54_RS11315	0.23	+0.7
2,510,384	+		LRK54_RS11315	0.23	+0.7
2,510,384	+		LRK54_RS11315	0.23	-2.8
2,510,385	-		LRK54_RS11315	0.24	-2.6
2,510,385	-		LRK54_RS11315	0.24	+0.4
2,510,385	-		LRK54_RS11315	0.24	-0.5
2,510,385	-		LRK54_RS11315	0.24	+2.0
2,510,385	-		LRK54_RS11315	0.24	-1.4
2,510,385	-		LRK54_RS11315	0.24	-1.1
2,510,385	-		LRK54_RS11315	0.24	+0.3
2,510,385	-		LRK54_RS11315	0.24	+1.3
2,510,385	-		LRK54_RS11315	0.24	-1.2
2,510,385	-		LRK54_RS11315	0.24	+0.7
2,510,385	-		LRK54_RS11315	0.24	+0.2
2,510,385	-		LRK54_RS11315	0.24	-0.7
2,510,385	-		LRK54_RS11315	0.24	+2.3
2,510,385	-		LRK54_RS11315	0.24	+1.0
2,510,385	-		LRK54_RS11315	0.24	+0.7
2,510,385	-		LRK54_RS11315	0.24	+0.5
2,510,385	-		LRK54_RS11315	0.24	+0.7
2,510,514	-		LRK54_RS11315	0.46	-0.7
2,510,582	+		LRK54_RS11315	0.58	-1.8
2,510,582	+		LRK54_RS11315	0.58	+0.3
2,510,582	+		LRK54_RS11315	0.58	-0.9
2,510,582	+		LRK54_RS11315	0.58	-1.7
2,510,583	-		LRK54_RS11315	0.58	-0.5
2,510,583	-		LRK54_RS11315	0.58	-2.0
2,510,583	-		LRK54_RS11315	0.58	-2.0
2,510,583	-		LRK54_RS11315	0.58	+0.8
2,510,583	-		LRK54_RS11315	0.58	+0.7
2,510,583	-		LRK54_RS11315	0.58	-1.4
2,510,583	-		LRK54_RS11315	0.58	-2.9
2,510,583	-		LRK54_RS11315	0.58	+4.0
2,510,583	-		LRK54_RS11315	0.58	+0.4
2,510,671	+		LRK54_RS11315	0.73	-0.1
2,510,671	+		LRK54_RS11315	0.73	+4.3
2,510,671	+		LRK54_RS11315	0.73	-2.3
2,510,671	+		LRK54_RS11315	0.73	+0.9
2,510,671	+		LRK54_RS11315	0.73	-2.3
2,510,671	+		LRK54_RS11315	0.73	-1.4
2,510,671	+		LRK54_RS11315	0.73	+1.7
2,510,671	+		LRK54_RS11315	0.73	-0.8
2,510,672	-		LRK54_RS11315	0.73	-0.3
2,510,672	-		LRK54_RS11315	0.73	-1.7
2,510,672	-		LRK54_RS11315	0.73	-1.2
2,510,672	-		LRK54_RS11315	0.73	-2.2
2,510,672	-		LRK54_RS11315	0.73	+2.1
2,510,672	-		LRK54_RS11315	0.73	+0.2
2,510,672	-		LRK54_RS11315	0.73	-3.1
2,510,735	+		LRK54_RS11315	0.84	-1.2
2,510,735	+		LRK54_RS11315	0.84	-0.2
2,510,735	+		LRK54_RS11315	0.84	+1.9
2,510,735	+		LRK54_RS11315	0.84	-0.9
2,510,736	-		LRK54_RS11315	0.84	-0.5
2,510,736	-		LRK54_RS11315	0.84	+0.7
2,510,736	-		LRK54_RS11315	0.84	+1.6
2,510,839	+				-0.3
2,510,839	+				-0.1
2,510,839	+				-1.5
2,510,897	+				-2.3
2,510,897	+				-0.7
2,510,897	+				+0.3
2,510,897	+				+2.3
2,510,897	+				-1.9
2,510,897	+				+1.3
2,510,897	+				+1.7
2,510,897	+				-0.7
2,510,897	+				-1.4
2,510,897	+				-0.6
2,510,897	+				-2.8
2,510,897	+				-0.9
2,510,897	+				-1.0
2,510,897	+				+0.3
2,510,897	+				-0.3
2,510,897	+				+1.4
2,510,897	+				-0.0
2,510,897	+				-0.8
2,510,897	+				-4.1
2,510,897	+				+0.6
2,510,897	+				+2.0
2,510,897	+				-0.7
2,510,897	+				-2.3
2,510,897	+				-1.0
2,510,897	+				+0.7
2,510,897	+				-0.0
2,510,897	+				+0.3
2,510,897	+				-1.5
2,510,898	-				-0.0
2,510,898	-				-1.2
2,510,898	-				-0.3
2,510,898	-				+0.7
2,510,898	-				+1.6
2,510,898	-				+0.7
2,510,898	-				+2.3
2,510,898	-				-1.2
2,510,898	-				+0.7
2,510,898	-				+0.7
2,510,898	-				+2.3
2,510,898	-				-1.4
2,510,898	-				+1.7
2,510,898	-				-0.3
2,510,898	-				-0.7
2,510,898	-				-1.8
2,510,898	-				-0.7
2,510,898	-				-1.4
2,510,898	-				+0.7
2,510,898	-				+4.3
2,510,898	-				+2.3
2,510,898	-				-0.0
2,510,901	+				-0.3
2,510,901	+				-1.0
2,510,901	+				+0.9
2,510,901	+				-0.5
2,510,901	+				-1.2
2,510,901	+				-0.8
2,510,901	+				-0.3
2,510,901	+				+4.2
2,510,901	+				-0.4
2,510,901	+				-1.1
2,510,901	+				+0.6
2,510,901	+				-2.0
2,510,901	+				-1.4
2,510,901	+				+0.7
2,510,901	+				-1.5
2,510,901	+				-0.5
2,510,901	+				+1.7
2,510,901	+				-1.0
2,510,901	+				-0.3
2,510,901	+				-0.3
2,510,901	+				-0.2
2,510,901	+				+0.6
2,510,901	+				-0.2
2,510,901	+				+0.3
2,510,901	+				-1.2
2,510,901	+				-1.2
2,510,901	+				-1.0
2,510,901	+				-0.4
2,510,902	-				+0.3
2,510,902	-				+0.6
2,510,902	-				-0.0
2,510,902	-				-0.7
2,510,902	-				+0.3
2,510,902	-				-0.5
2,510,902	-				-0.3
2,510,902	-				-2.3
2,510,902	-				-1.3
2,510,902	-				+1.4
2,510,902	-				-1.6
2,510,989	-		LRK54_RS11320	0.15	-0.0
2,511,264	+				+1.5
2,511,265	-				-1.7
2,511,265	-				+0.7
2,511,525	+		LRK54_RS11325	0.32	+1.1
2,511,525	+		LRK54_RS11325	0.32	-0.7
2,511,526	-		LRK54_RS11325	0.32	-0.9
2,511,526	-		LRK54_RS11325	0.32	-1.8
2,511,557	+		LRK54_RS11325	0.37	+1.3
2,511,557	+		LRK54_RS11325	0.37	-2.0
2,511,594	+		LRK54_RS11325	0.43	-0.0
2,511,594	+		LRK54_RS11325	0.43	+2.3
2,511,594	+		LRK54_RS11325	0.43	-0.9
2,511,594	+		LRK54_RS11325	0.43	-1.3
2,511,595	-		LRK54_RS11325	0.43	-0.9
2,511,642	+		LRK54_RS11325	0.51	-2.0
2,511,642	+		LRK54_RS11325	0.51	+2.3
2,511,642	+		LRK54_RS11325	0.51	+1.3
2,511,642	+		LRK54_RS11325	0.51	+0.4
2,511,642	+		LRK54_RS11325	0.51	-2.1
2,511,642	+		LRK54_RS11325	0.51	-0.1
2,511,643	-		LRK54_RS11325	0.51	-3.7
2,511,643	-		LRK54_RS11325	0.51	+0.8
2,511,643	-		LRK54_RS11325	0.51	+0.2
2,511,643	-		LRK54_RS11325	0.51	-0.7
2,511,780	+		LRK54_RS11325	0.73	-0.9
2,511,780	+		LRK54_RS11325	0.73	-0.4
2,511,781	-		LRK54_RS11325	0.73	-0.0
2,511,781	-		LRK54_RS11325	0.73	-0.9
2,511,781	-		LRK54_RS11325	0.73	-0.3
2,511,781	-		LRK54_RS11325	0.73	-1.9