Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS08365

Experiment: 6-Pentyl-2H-pyran-2-one 0.5570485 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS08360 and AZOBR_RS08365 are separated by 235 nucleotidesAZOBR_RS08365 and AZOBR_RS08370 overlap by 1 nucleotidesAZOBR_RS08370 and AZOBR_RS08375 are separated by 33 nucleotides AZOBR_RS08360: AZOBR_RS08360 - cyclopropane-fatty-acyl-phospholipid synthase, at 1,757,859 to 1,759,046 _RS08360 AZOBR_RS08365: AZOBR_RS08365 - 50S ribosomal protein L9, at 1,759,282 to 1,759,848 _RS08365 AZOBR_RS08370: AZOBR_RS08370 - membrane protein, at 1,759,848 to 1,760,804 _RS08370 AZOBR_RS08375: AZOBR_RS08375 - 30S ribosomal protein S18, at 1,760,838 to 1,761,110 _RS08375 Position (kb) 1759 1760Strain fitness (log2 ratio) -1 0 1at 1758.607 kb on + strand, within AZOBR_RS08360at 1758.608 kb on - strand, within AZOBR_RS08360at 1758.620 kb on - strand, within AZOBR_RS08360at 1758.670 kb on + strand, within AZOBR_RS08360at 1758.670 kb on + strand, within AZOBR_RS08360at 1758.670 kb on + strand, within AZOBR_RS08360at 1758.723 kb on - strand, within AZOBR_RS08360at 1758.808 kb on - strand, within AZOBR_RS08360at 1758.854 kb on - strand, within AZOBR_RS08360

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.5570485 mM
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1,758,607 + AZOBR_RS08360 0.63 -0.2
1,758,608 - AZOBR_RS08360 0.63 -0.3
1,758,620 - AZOBR_RS08360 0.64 -0.4
1,758,670 + AZOBR_RS08360 0.68 -0.7
1,758,670 + AZOBR_RS08360 0.68 +0.7
1,758,670 + AZOBR_RS08360 0.68 -0.8
1,758,723 - AZOBR_RS08360 0.73 +0.1
1,758,808 - AZOBR_RS08360 0.80 +1.2
1,758,854 - AZOBR_RS08360 0.84 +0.5

Or see this region's nucleotide sequence