Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS00065

Experiment: 6-Pentyl-2H-pyran-2-one 0.5570485 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS00060 and AZOBR_RS00065 are separated by 3 nucleotidesAZOBR_RS00065 and AZOBR_RS00070 are separated by 38 nucleotides AZOBR_RS00060: AZOBR_RS00060 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein, at 855 to 1,928 _RS00060 AZOBR_RS00065: AZOBR_RS00065 - glycerol-3-phosphate transporter membrane protein, at 1,932 to 2,762 _RS00065 AZOBR_RS00070: AZOBR_RS00070 - glycerol-3-phosphate transporter permease, at 2,801 to 3,685 _RS00070 Position (kb) 1 2 3Strain fitness (log2 ratio) -2 -1 0 1at 1.000 kb on + strand, within AZOBR_RS00060at 1.001 kb on - strand, within AZOBR_RS00060at 1.001 kb on - strand, within AZOBR_RS00060at 1.010 kb on + strand, within AZOBR_RS00060at 1.264 kb on + strand, within AZOBR_RS00060at 1.265 kb on - strand, within AZOBR_RS00060at 1.363 kb on + strand, within AZOBR_RS00060at 1.363 kb on + strand, within AZOBR_RS00060at 1.364 kb on - strand, within AZOBR_RS00060at 1.364 kb on - strand, within AZOBR_RS00060at 1.669 kb on + strand, within AZOBR_RS00060at 1.678 kb on + strand, within AZOBR_RS00060at 1.679 kb on - strand, within AZOBR_RS00060at 1.679 kb on - strand, within AZOBR_RS00060at 1.679 kb on - strand, within AZOBR_RS00060at 1.679 kb on - strand, within AZOBR_RS00060at 1.934 kb on - strandat 2.134 kb on + strand, within AZOBR_RS00065at 2.134 kb on + strand, within AZOBR_RS00065at 2.135 kb on - strand, within AZOBR_RS00065at 2.135 kb on - strand, within AZOBR_RS00065at 2.150 kb on - strand, within AZOBR_RS00065at 2.344 kb on + strand, within AZOBR_RS00065at 2.344 kb on + strand, within AZOBR_RS00065at 2.344 kb on + strand, within AZOBR_RS00065at 2.345 kb on - strand, within AZOBR_RS00065at 2.380 kb on + strand, within AZOBR_RS00065at 2.380 kb on + strand, within AZOBR_RS00065at 2.381 kb on - strand, within AZOBR_RS00065at 2.479 kb on + strand, within AZOBR_RS00065at 2.611 kb on + strand, within AZOBR_RS00065at 2.612 kb on - strand, within AZOBR_RS00065at 2.612 kb on - strand, within AZOBR_RS00065at 2.612 kb on - strand, within AZOBR_RS00065at 2.612 kb on - strand, within AZOBR_RS00065at 2.612 kb on - strand, within AZOBR_RS00065at 2.754 kb on + strandat 2.754 kb on + strandat 2.754 kb on + strandat 2.754 kb on + strandat 2.754 kb on + strandat 2.754 kb on + strandat 2.755 kb on - strandat 2.755 kb on - strandat 2.808 kb on + strandat 2.808 kb on + strandat 2.808 kb on + strandat 2.808 kb on + strandat 2.808 kb on + strandat 2.808 kb on + strandat 2.809 kb on - strandat 2.809 kb on - strandat 2.809 kb on - strandat 2.809 kb on - strandat 2.809 kb on - strandat 2.809 kb on - strandat 2.929 kb on - strand, within AZOBR_RS00070at 3.015 kb on + strand, within AZOBR_RS00070at 3.174 kb on + strand, within AZOBR_RS00070at 3.174 kb on + strand, within AZOBR_RS00070at 3.175 kb on - strand, within AZOBR_RS00070at 3.175 kb on - strand, within AZOBR_RS00070at 3.175 kb on - strand, within AZOBR_RS00070at 3.369 kb on + strand, within AZOBR_RS00070at 3.369 kb on + strand, within AZOBR_RS00070at 3.487 kb on - strand, within AZOBR_RS00070at 3.487 kb on - strand, within AZOBR_RS00070at 3.487 kb on - strand, within AZOBR_RS00070at 3.645 kb on + strandat 3.646 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.5570485 mM
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1,000 + AZOBR_RS00060 0.14 +0.2
1,001 - AZOBR_RS00060 0.14 -0.3
1,001 - AZOBR_RS00060 0.14 +0.6
1,010 + AZOBR_RS00060 0.14 -0.4
1,264 + AZOBR_RS00060 0.38 +0.5
1,265 - AZOBR_RS00060 0.38 -0.3
1,363 + AZOBR_RS00060 0.47 -0.3
1,363 + AZOBR_RS00060 0.47 +0.6
1,364 - AZOBR_RS00060 0.47 +0.0
1,364 - AZOBR_RS00060 0.47 +0.2
1,669 + AZOBR_RS00060 0.76 -2.3
1,678 + AZOBR_RS00060 0.77 -0.4
1,679 - AZOBR_RS00060 0.77 -0.3
1,679 - AZOBR_RS00060 0.77 -0.7
1,679 - AZOBR_RS00060 0.77 +0.2
1,679 - AZOBR_RS00060 0.77 -0.0
1,934 - -0.3
2,134 + AZOBR_RS00065 0.24 +0.0
2,134 + AZOBR_RS00065 0.24 -0.4
2,135 - AZOBR_RS00065 0.24 -0.7
2,135 - AZOBR_RS00065 0.24 -0.3
2,150 - AZOBR_RS00065 0.26 -0.2
2,344 + AZOBR_RS00065 0.50 +0.5
2,344 + AZOBR_RS00065 0.50 -1.1
2,344 + AZOBR_RS00065 0.50 +0.1
2,345 - AZOBR_RS00065 0.50 +1.1
2,380 + AZOBR_RS00065 0.54 -0.1
2,380 + AZOBR_RS00065 0.54 +0.1
2,381 - AZOBR_RS00065 0.54 -0.4
2,479 + AZOBR_RS00065 0.66 +0.1
2,611 + AZOBR_RS00065 0.82 -0.8
2,612 - AZOBR_RS00065 0.82 +0.5
2,612 - AZOBR_RS00065 0.82 -0.1
2,612 - AZOBR_RS00065 0.82 +0.2
2,612 - AZOBR_RS00065 0.82 -0.4
2,612 - AZOBR_RS00065 0.82 -0.4
2,754 + -0.5
2,754 + +0.1
2,754 + -0.4
2,754 + +0.1
2,754 + -1.9
2,754 + -0.1
2,755 - +0.6
2,755 - +0.5
2,808 + +0.2
2,808 + +0.2
2,808 + -0.5
2,808 + -0.2
2,808 + -0.5
2,808 + +0.4
2,809 - -0.4
2,809 - -0.8
2,809 - -0.4
2,809 - +0.3
2,809 - +0.2
2,809 - +0.1
2,929 - AZOBR_RS00070 0.14 -1.5
3,015 + AZOBR_RS00070 0.24 -0.1
3,174 + AZOBR_RS00070 0.42 +0.1
3,174 + AZOBR_RS00070 0.42 +0.8
3,175 - AZOBR_RS00070 0.42 -0.2
3,175 - AZOBR_RS00070 0.42 +0.2
3,175 - AZOBR_RS00070 0.42 -0.1
3,369 + AZOBR_RS00070 0.64 -0.2
3,369 + AZOBR_RS00070 0.64 +0.3
3,487 - AZOBR_RS00070 0.78 -2.4
3,487 - AZOBR_RS00070 0.78 -0.2
3,487 - AZOBR_RS00070 0.78 -0.7
3,645 + -0.1
3,646 - +0.3

Or see this region's nucleotide sequence