Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_930 and HP15_931 are separated by 81 nucleotides HP15_931 and HP15_932 are separated by 113 nucleotides HP15_932 and HP15_933 overlap by 4 nucleotides
HP15_930: HP15_930 - branched-chain amino acid transport permease, at 943,903 to 944,898
_930
HP15_931: HP15_931 - lipoprotein, at 944,980 to 945,507
_931
HP15_932: HP15_932 - efflux transporter, RND family, MFP subunit, at 945,621 to 946,790
_932
HP15_933: HP15_933 - transporter, hydrophobe/amphiphile efflux-1 (HAE1) family, at 946,787 to 949,891
_933
Position (kb) 945
946
947 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 944.772 kb on + strand, within HP15_930 at 944.827 kb on - strand at 944.866 kb on + strand at 944.932 kb on + strand at 944.932 kb on + strand at 944.978 kb on + strand at 945.189 kb on - strand, within HP15_931 at 945.578 kb on + strand at 945.672 kb on - strand at 945.688 kb on + strand at 945.696 kb on - strand at 945.893 kb on - strand, within HP15_932 at 946.066 kb on - strand, within HP15_932 at 946.068 kb on + strand, within HP15_932 at 946.076 kb on - strand, within HP15_932 at 946.109 kb on - strand, within HP15_932 at 946.146 kb on + strand, within HP15_932 at 946.154 kb on - strand, within HP15_932 at 946.196 kb on - strand, within HP15_932 at 946.219 kb on + strand, within HP15_932 at 946.327 kb on - strand, within HP15_932 at 946.363 kb on + strand, within HP15_932 at 946.363 kb on + strand, within HP15_932 at 946.476 kb on - strand, within HP15_932 at 946.483 kb on - strand, within HP15_932 at 946.495 kb on - strand, within HP15_932 at 946.619 kb on - strand, within HP15_932 at 946.711 kb on + strand at 946.782 kb on + strand at 946.850 kb on - strand at 946.873 kb on - strand at 947.001 kb on + strand at 947.059 kb on - strand at 947.068 kb on - strand at 947.108 kb on + strand, within HP15_933 at 947.131 kb on - strand, within HP15_933 at 947.205 kb on + strand, within HP15_933 at 947.205 kb on + strand, within HP15_933 at 947.205 kb on + strand, within HP15_933 at 947.205 kb on + strand, within HP15_933 at 947.212 kb on + strand, within HP15_933 at 947.239 kb on - strand, within HP15_933 at 947.249 kb on - strand, within HP15_933 at 947.282 kb on + strand, within HP15_933 at 947.332 kb on + strand, within HP15_933 at 947.340 kb on - strand, within HP15_933 at 947.341 kb on - strand, within HP15_933 at 947.360 kb on - strand, within HP15_933 at 947.391 kb on + strand, within HP15_933 at 947.453 kb on - strand, within HP15_933 at 947.479 kb on - strand, within HP15_933 at 947.500 kb on - strand, within HP15_933 at 947.582 kb on + strand, within HP15_933 at 947.583 kb on - strand, within HP15_933 at 947.583 kb on - strand, within HP15_933 at 947.657 kb on - strand, within HP15_933 at 947.707 kb on + strand, within HP15_933 at 947.755 kb on + strand, within HP15_933 at 947.755 kb on + strand, within HP15_933 at 947.765 kb on + strand, within HP15_933 at 947.773 kb on - strand, within HP15_933
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 944,772 + HP15_930 0.87 +0.0 944,827 - -0.2 944,866 + +0.1 944,932 + -1.2 944,932 + -1.4 944,978 + -1.7 945,189 - HP15_931 0.40 -0.8 945,578 + +0.5 945,672 - +2.2 945,688 + -1.4 945,696 - +0.0 945,893 - HP15_932 0.23 +1.9 946,066 - HP15_932 0.38 +0.3 946,068 + HP15_932 0.38 +1.4 946,076 - HP15_932 0.39 +0.5 946,109 - HP15_932 0.42 -0.4 946,146 + HP15_932 0.45 +1.5 946,154 - HP15_932 0.46 +2.8 946,196 - HP15_932 0.49 +0.8 946,219 + HP15_932 0.51 +2.3 946,327 - HP15_932 0.60 +1.1 946,363 + HP15_932 0.63 -1.4 946,363 + HP15_932 0.63 -1.3 946,476 - HP15_932 0.73 +0.6 946,483 - HP15_932 0.74 -0.6 946,495 - HP15_932 0.75 -1.7 946,619 - HP15_932 0.85 -0.4 946,711 + -0.0 946,782 + -0.6 946,850 - -0.7 946,873 - -1.0 947,001 + -1.0 947,059 - +1.0 947,068 - +0.7 947,108 + HP15_933 0.10 -0.6 947,131 - HP15_933 0.11 +1.3 947,205 + HP15_933 0.13 +1.5 947,205 + HP15_933 0.13 -1.2 947,205 + HP15_933 0.13 -0.9 947,205 + HP15_933 0.13 -0.7 947,212 + HP15_933 0.14 +1.2 947,239 - HP15_933 0.15 -0.4 947,249 - HP15_933 0.15 -1.1 947,282 + HP15_933 0.16 +0.9 947,332 + HP15_933 0.18 -0.6 947,340 - HP15_933 0.18 -1.1 947,341 - HP15_933 0.18 -1.8 947,360 - HP15_933 0.18 +0.2 947,391 + HP15_933 0.19 +1.8 947,453 - HP15_933 0.21 +1.4 947,479 - HP15_933 0.22 -3.2 947,500 - HP15_933 0.23 -0.2 947,582 + HP15_933 0.26 +0.2 947,583 - HP15_933 0.26 -0.6 947,583 - HP15_933 0.26 -0.1 947,657 - HP15_933 0.28 -2.3 947,707 + HP15_933 0.30 -0.1 947,755 + HP15_933 0.31 +0.2 947,755 + HP15_933 0.31 -0.5 947,765 + HP15_933 0.31 -0.5 947,773 - HP15_933 0.32 +1.9
Or see this region's nucleotide sequence