Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_92 and HP15_93 are separated by 26 nucleotides HP15_93 and HP15_94 are separated by 42 nucleotides HP15_94 and HP15_95 are separated by 75 nucleotides HP15_95 and HP15_96 are separated by 217 nucleotides HP15_96 and HP15_97 are separated by 4 nucleotides
HP15_92: HP15_92 - DSBA oxidoreductase, at 96,674 to 97,312
_92
HP15_93: HP15_93 - hypothetical protein, at 97,339 to 97,446
_93
HP15_94: HP15_94 - sodium: bile acid symporter family protein-like protein, at 97,489 to 98,061
_94
HP15_95: HP15_95 - cation diffusion facilitator family transporter, at 98,137 to 98,925
_95
HP15_96: HP15_96 - lipoprotein signal peptidase, at 99,143 to 99,658
_96
HP15_97: HP15_97 - cation efflux system protein, at 99,663 to 100,559
_97
Position (kb) 98
99 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 97.158 kb on + strand, within HP15_92 at 97.305 kb on - strand at 97.305 kb on - strand at 97.310 kb on + strand at 97.336 kb on + strand at 97.429 kb on + strand, within HP15_93 at 97.457 kb on + strand at 97.457 kb on + strand at 97.465 kb on - strand at 97.494 kb on - strand at 97.576 kb on + strand, within HP15_94 at 97.649 kb on - strand, within HP15_94 at 97.649 kb on - strand, within HP15_94 at 97.697 kb on - strand, within HP15_94 at 97.746 kb on - strand, within HP15_94 at 97.796 kb on - strand, within HP15_94 at 97.796 kb on - strand, within HP15_94 at 97.915 kb on + strand, within HP15_94 at 97.949 kb on + strand, within HP15_94 at 97.957 kb on + strand, within HP15_94 at 97.957 kb on + strand, within HP15_94 at 97.957 kb on + strand, within HP15_94 at 97.959 kb on + strand, within HP15_94 at 97.965 kb on - strand, within HP15_94 at 97.965 kb on - strand, within HP15_94 at 97.967 kb on - strand, within HP15_94 at 97.967 kb on - strand, within HP15_94 at 97.967 kb on - strand, within HP15_94 at 97.985 kb on - strand, within HP15_94 at 98.027 kb on + strand at 98.027 kb on + strand at 98.027 kb on + strand at 98.027 kb on + strand at 98.035 kb on - strand at 98.065 kb on - strand at 98.067 kb on + strand at 98.067 kb on + strand at 98.075 kb on - strand at 98.134 kb on - strand at 98.145 kb on + strand at 98.245 kb on + strand, within HP15_95 at 98.304 kb on - strand, within HP15_95 at 98.342 kb on + strand, within HP15_95 at 98.411 kb on + strand, within HP15_95 at 98.411 kb on + strand, within HP15_95 at 98.414 kb on - strand, within HP15_95 at 98.427 kb on + strand, within HP15_95 at 98.429 kb on - strand, within HP15_95 at 98.477 kb on - strand, within HP15_95 at 98.550 kb on - strand, within HP15_95 at 98.576 kb on + strand, within HP15_95 at 98.621 kb on + strand, within HP15_95 at 98.635 kb on - strand, within HP15_95 at 98.666 kb on - strand, within HP15_95 at 98.812 kb on + strand, within HP15_95 at 98.820 kb on - strand, within HP15_95 at 98.820 kb on - strand, within HP15_95 at 98.826 kb on - strand, within HP15_95 at 98.852 kb on - strand at 98.904 kb on - strand at 98.962 kb on + strand at 98.970 kb on - strand at 98.970 kb on - strand at 98.999 kb on + strand at 98.999 kb on + strand at 99.007 kb on - strand at 99.007 kb on - strand at 99.098 kb on + strand at 99.113 kb on + strand at 99.178 kb on - strand at 99.180 kb on - strand at 99.248 kb on + strand, within HP15_96 at 99.254 kb on - strand, within HP15_96 at 99.255 kb on - strand, within HP15_96 at 99.365 kb on - strand, within HP15_96 at 99.368 kb on + strand, within HP15_96 at 99.399 kb on + strand, within HP15_96 at 99.404 kb on + strand, within HP15_96 at 99.422 kb on - strand, within HP15_96 at 99.422 kb on - strand, within HP15_96 at 99.521 kb on + strand, within HP15_96 at 99.552 kb on + strand, within HP15_96 at 99.560 kb on - strand, within HP15_96 at 99.687 kb on - strand at 99.699 kb on + strand at 99.701 kb on + strand at 99.701 kb on + strand at 99.709 kb on - strand at 99.752 kb on - strand at 99.793 kb on - strand, within HP15_97 at 99.793 kb on - strand, within HP15_97 at 99.836 kb on + strand, within HP15_97 at 99.885 kb on - strand, within HP15_97
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 97,158 + HP15_92 0.76 -1.1 97,305 - +0.8 97,305 - +0.2 97,310 + -0.1 97,336 + +0.1 97,429 + HP15_93 0.83 +1.7 97,457 + -0.5 97,457 + -1.3 97,465 - -1.1 97,494 - -0.9 97,576 + HP15_94 0.15 -1.0 97,649 - HP15_94 0.28 +1.8 97,649 - HP15_94 0.28 -2.9 97,697 - HP15_94 0.36 -1.9 97,746 - HP15_94 0.45 -1.7 97,796 - HP15_94 0.54 +0.8 97,796 - HP15_94 0.54 +1.2 97,915 + HP15_94 0.74 -0.6 97,949 + HP15_94 0.80 +1.5 97,957 + HP15_94 0.82 -2.4 97,957 + HP15_94 0.82 -0.2 97,957 + HP15_94 0.82 -1.7 97,959 + HP15_94 0.82 -0.4 97,965 - HP15_94 0.83 -0.4 97,965 - HP15_94 0.83 +0.0 97,967 - HP15_94 0.83 +1.2 97,967 - HP15_94 0.83 +1.8 97,967 - HP15_94 0.83 +0.0 97,985 - HP15_94 0.87 +0.7 98,027 + +2.2 98,027 + +1.4 98,027 + +0.0 98,027 + -0.1 98,035 - -1.8 98,065 - -1.0 98,067 + +1.5 98,067 + +1.7 98,075 - -0.2 98,134 - +1.4 98,145 + +2.1 98,245 + HP15_95 0.14 -0.9 98,304 - HP15_95 0.21 -1.8 98,342 + HP15_95 0.26 -0.7 98,411 + HP15_95 0.35 -0.6 98,411 + HP15_95 0.35 +2.4 98,414 - HP15_95 0.35 -1.2 98,427 + HP15_95 0.37 -0.3 98,429 - HP15_95 0.37 +0.0 98,477 - HP15_95 0.43 -0.7 98,550 - HP15_95 0.52 -0.9 98,576 + HP15_95 0.56 -0.6 98,621 + HP15_95 0.61 -0.4 98,635 - HP15_95 0.63 +1.6 98,666 - HP15_95 0.67 +2.0 98,812 + HP15_95 0.86 +1.5 98,820 - HP15_95 0.87 +2.1 98,820 - HP15_95 0.87 -1.0 98,826 - HP15_95 0.87 +0.5 98,852 - +1.3 98,904 - +3.0 98,962 + -0.2 98,970 - +0.1 98,970 - -0.4 98,999 + +1.6 98,999 + -1.3 99,007 - -0.7 99,007 - +2.1 99,098 + -1.0 99,113 + +0.3 99,178 - +0.2 99,180 - -0.9 99,248 + HP15_96 0.20 +0.5 99,254 - HP15_96 0.22 +1.0 99,255 - HP15_96 0.22 -0.4 99,365 - HP15_96 0.43 -0.4 99,368 + HP15_96 0.44 +0.7 99,399 + HP15_96 0.50 +0.7 99,404 + HP15_96 0.51 +2.6 99,422 - HP15_96 0.54 -2.9 99,422 - HP15_96 0.54 +1.6 99,521 + HP15_96 0.73 +1.0 99,552 + HP15_96 0.79 +1.1 99,560 - HP15_96 0.81 -1.0 99,687 - -1.1 99,699 + -0.7 99,701 + +3.3 99,701 + -0.3 99,709 - +1.4 99,752 - +1.3 99,793 - HP15_97 0.14 +0.5 99,793 - HP15_97 0.14 +4.0 99,836 + HP15_97 0.19 -0.1 99,885 - HP15_97 0.25 +1.6
Or see this region's nucleotide sequence