Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_797 and HP15_798 are separated by 31 nucleotides HP15_798 and HP15_799 are separated by 133 nucleotides HP15_799 and HP15_800 overlap by 1 nucleotides HP15_800 and HP15_802 are separated by 6 nucleotides
HP15_797: HP15_797 - adenylate kinase, at 812,659 to 813,312
_797
HP15_798: HP15_798 - peptidase M22, glycoprotease, at 813,344 to 814,039
_798
HP15_799: HP15_799 - undecaprenyl pyrophosphate phosphatase-like protein, at 814,173 to 814,535
_799
HP15_800: HP15_800 - protein YhiQ, at 814,535 to 815,374
_800
HP15_802: HP15_802 - glycerol-3-phosphate acyltransferase, at 815,381 to 817,849
_802
Position (kb) 814
815 Strain fitness (log2 ratio) -2
-1
0
1
2 at 814.039 kb on - strand at 814.108 kb on - strand at 814.232 kb on + strand, within HP15_799 at 814.430 kb on - strand, within HP15_799 at 814.570 kb on + strand at 814.623 kb on - strand, within HP15_800 at 814.714 kb on - strand, within HP15_800 at 814.739 kb on - strand, within HP15_800 at 814.888 kb on - strand, within HP15_800 at 814.919 kb on + strand, within HP15_800 at 814.947 kb on + strand, within HP15_800 at 814.947 kb on + strand, within HP15_800 at 814.955 kb on - strand, within HP15_800 at 814.991 kb on + strand, within HP15_800 at 815.020 kb on - strand, within HP15_800 at 815.062 kb on + strand, within HP15_800 at 815.342 kb on + strand at 815.429 kb on + strand at 815.435 kb on - strand at 815.473 kb on + strand at 815.481 kb on - strand at 815.491 kb on - strand at 815.491 kb on - strand at 815.522 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 814,039 - -1.2 814,108 - -0.9 814,232 + HP15_799 0.16 +1.7 814,430 - HP15_799 0.71 +1.8 814,570 + +0.8 814,623 - HP15_800 0.10 -0.2 814,714 - HP15_800 0.21 -2.2 814,739 - HP15_800 0.24 +2.1 814,888 - HP15_800 0.42 +2.6 814,919 + HP15_800 0.46 +1.0 814,947 + HP15_800 0.49 +1.6 814,947 + HP15_800 0.49 -1.6 814,955 - HP15_800 0.50 -0.9 814,991 + HP15_800 0.54 +0.5 815,020 - HP15_800 0.58 -0.3 815,062 + HP15_800 0.63 +1.8 815,342 + -1.2 815,429 + -0.4 815,435 - -1.7 815,473 + -0.5 815,481 - +1.6 815,491 - -1.2 815,491 - +1.8 815,522 - -0.2
Or see this region's nucleotide sequence