Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_780 and HP15_781 are separated by 104 nucleotides HP15_781 and HP15_782 are separated by 12 nucleotides HP15_782 and HP15_783 are separated by 26 nucleotides
HP15_780: HP15_780 - sensory box/GGDEF family protein, at 790,020 to 792,770
_780
HP15_781: HP15_781 - GTP-binding protein LepA, at 792,875 to 794,677
_781
HP15_782: HP15_782 - signal peptidase I, at 794,690 to 795,496
_782
HP15_783: HP15_783 - conserved hypothetical protein, at 795,523 to 795,912
_783
Position (kb) 792
793
794
795 Strain fitness (log2 ratio) -2
-1
0
1
2 at 791.886 kb on - strand, within HP15_780 at 791.969 kb on + strand, within HP15_780 at 792.060 kb on + strand, within HP15_780 at 792.123 kb on + strand, within HP15_780 at 792.194 kb on + strand, within HP15_780 at 792.204 kb on - strand, within HP15_780 at 792.209 kb on - strand, within HP15_780 at 792.301 kb on + strand, within HP15_780 at 792.328 kb on - strand, within HP15_780 at 792.357 kb on + strand, within HP15_780 at 792.615 kb on - strand at 792.637 kb on + strand at 792.637 kb on + strand at 792.637 kb on + strand at 792.688 kb on - strand at 793.001 kb on + strand at 793.066 kb on + strand, within HP15_781 at 793.066 kb on + strand, within HP15_781 at 793.066 kb on + strand, within HP15_781 at 793.196 kb on + strand, within HP15_781 at 793.763 kb on + strand, within HP15_781 at 794.211 kb on + strand, within HP15_781
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 791,886 - HP15_780 0.68 -1.2 791,969 + HP15_780 0.71 -2.0 792,060 + HP15_780 0.74 +0.8 792,123 + HP15_780 0.76 +1.5 792,194 + HP15_780 0.79 -0.8 792,204 - HP15_780 0.79 +0.1 792,209 - HP15_780 0.80 -0.3 792,301 + HP15_780 0.83 -0.0 792,328 - HP15_780 0.84 +1.8 792,357 + HP15_780 0.85 +0.3 792,615 - +2.0 792,637 + -1.4 792,637 + -0.4 792,637 + -2.2 792,688 - +1.4 793,001 + -2.7 793,066 + HP15_781 0.11 +0.1 793,066 + HP15_781 0.11 +0.6 793,066 + HP15_781 0.11 -2.3 793,196 + HP15_781 0.18 -1.5 793,763 + HP15_781 0.49 -1.4 794,211 + HP15_781 0.74 -0.4
Or see this region's nucleotide sequence