Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_745 and HP15_746 are separated by 246 nucleotides HP15_746 and HP15_747 are separated by 165 nucleotides
HP15_745: HP15_745 - conserved hypothetical protein, at 753,496 to 754,257
_745
HP15_746: HP15_746 - two component transcriptional regulator, winged helix family, at 754,504 to 755,241
_746
HP15_747: HP15_747 - integral membrane sensor signal transduction histidine kinase, at 755,407 to 756,882
_747
Position (kb) 754
755
756 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 753.560 kb on + strand at 753.575 kb on - strand, within HP15_745 at 753.635 kb on + strand, within HP15_745 at 753.635 kb on + strand, within HP15_745 at 753.754 kb on - strand, within HP15_745 at 753.863 kb on - strand, within HP15_745 at 753.863 kb on - strand at 753.934 kb on + strand, within HP15_745 at 754.043 kb on + strand, within HP15_745 at 754.072 kb on + strand, within HP15_745 at 754.175 kb on + strand, within HP15_745 at 754.185 kb on + strand at 754.193 kb on - strand at 754.335 kb on - strand at 754.382 kb on + strand at 754.511 kb on + strand at 754.610 kb on + strand, within HP15_746 at 755.008 kb on + strand, within HP15_746 at 755.016 kb on - strand, within HP15_746 at 755.016 kb on - strand, within HP15_746 at 755.124 kb on - strand, within HP15_746 at 755.137 kb on - strand, within HP15_746 at 755.193 kb on + strand at 755.193 kb on + strand at 755.215 kb on + strand at 755.298 kb on + strand at 755.792 kb on + strand, within HP15_747 at 755.925 kb on - strand, within HP15_747
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 753,560 + -0.6 753,575 - HP15_745 0.10 -0.2 753,635 + HP15_745 0.18 -0.3 753,635 + HP15_745 0.18 -1.2 753,754 - HP15_745 0.34 -0.5 753,863 - HP15_745 0.48 -1.9 753,863 - -0.9 753,934 + HP15_745 0.57 +2.2 754,043 + HP15_745 0.72 +0.8 754,072 + HP15_745 0.76 +1.7 754,175 + HP15_745 0.89 +1.6 754,185 + -0.8 754,193 - +0.2 754,335 - -1.5 754,382 + -0.8 754,511 + +1.8 754,610 + HP15_746 0.14 +1.9 755,008 + HP15_746 0.68 +0.1 755,016 - HP15_746 0.69 +1.1 755,016 - HP15_746 0.69 +2.2 755,124 - HP15_746 0.84 +1.6 755,137 - HP15_746 0.86 +1.1 755,193 + +3.0 755,193 + +2.8 755,215 + +1.8 755,298 + +0.1 755,792 + HP15_747 0.26 +3.6 755,925 - HP15_747 0.35 +1.1
Or see this region's nucleotide sequence