Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_742 and HP15_743 are separated by 248 nucleotides HP15_743 and HP15_744 are separated by 13 nucleotides HP15_744 and HP15_745 are separated by 17 nucleotides
HP15_742: HP15_742 - acetyl-CoA hydrolase, at 750,020 to 752,230
_742
HP15_743: HP15_743 - hypothetical protein, at 752,479 to 752,604
_743
HP15_744: HP15_744 - phospholipid/glycerol acyltransferase, at 752,618 to 753,478
_744
HP15_745: HP15_745 - conserved hypothetical protein, at 753,496 to 754,257
_745
Position (kb) 752
753
754 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 751.620 kb on + strand, within HP15_742 at 751.657 kb on + strand, within HP15_742 at 751.660 kb on - strand, within HP15_742 at 751.665 kb on - strand, within HP15_742 at 751.669 kb on + strand, within HP15_742 at 751.677 kb on - strand, within HP15_742 at 751.677 kb on - strand, within HP15_742 at 751.706 kb on - strand, within HP15_742 at 751.760 kb on + strand, within HP15_742 at 751.797 kb on + strand, within HP15_742 at 751.901 kb on - strand, within HP15_742 at 752.025 kb on - strand at 752.136 kb on - strand at 752.144 kb on - strand at 752.189 kb on - strand at 752.218 kb on + strand at 752.234 kb on - strand at 752.252 kb on - strand at 752.351 kb on - strand at 752.458 kb on - strand at 752.458 kb on - strand at 752.492 kb on - strand, within HP15_743 at 752.499 kb on - strand, within HP15_743 at 752.667 kb on + strand at 752.694 kb on + strand at 752.694 kb on + strand at 752.771 kb on - strand, within HP15_744 at 752.775 kb on - strand, within HP15_744 at 752.821 kb on - strand, within HP15_744 at 752.830 kb on + strand at 752.835 kb on + strand, within HP15_744 at 752.985 kb on + strand, within HP15_744 at 752.993 kb on - strand, within HP15_744 at 753.022 kb on + strand, within HP15_744 at 753.058 kb on - strand, within HP15_744 at 753.100 kb on - strand, within HP15_744 at 753.107 kb on + strand, within HP15_744 at 753.107 kb on + strand, within HP15_744 at 753.110 kb on - strand, within HP15_744 at 753.115 kb on - strand, within HP15_744 at 753.115 kb on - strand, within HP15_744 at 753.219 kb on - strand, within HP15_744 at 753.300 kb on + strand, within HP15_744 at 753.300 kb on + strand, within HP15_744 at 753.347 kb on + strand, within HP15_744 at 753.412 kb on + strand at 753.560 kb on + strand at 753.575 kb on - strand, within HP15_745 at 753.635 kb on + strand, within HP15_745 at 753.635 kb on + strand, within HP15_745 at 753.754 kb on - strand, within HP15_745 at 753.863 kb on - strand, within HP15_745 at 753.863 kb on - strand at 753.934 kb on + strand, within HP15_745 at 754.043 kb on + strand, within HP15_745 at 754.072 kb on + strand, within HP15_745 at 754.175 kb on + strand, within HP15_745 at 754.185 kb on + strand at 754.193 kb on - strand at 754.335 kb on - strand at 754.382 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 751,620 + HP15_742 0.72 -0.2 751,657 + HP15_742 0.74 +0.3 751,660 - HP15_742 0.74 -0.7 751,665 - HP15_742 0.74 -0.4 751,669 + HP15_742 0.75 +1.8 751,677 - HP15_742 0.75 -0.7 751,677 - HP15_742 0.75 -1.6 751,706 - HP15_742 0.76 +3.3 751,760 + HP15_742 0.79 +1.1 751,797 + HP15_742 0.80 +1.3 751,901 - HP15_742 0.85 +0.6 752,025 - +1.6 752,136 - -0.7 752,144 - -1.3 752,189 - +1.9 752,218 + -0.8 752,234 - +0.3 752,252 - -0.7 752,351 - -0.6 752,458 - -1.2 752,458 - +1.9 752,492 - HP15_743 0.10 +1.8 752,499 - HP15_743 0.16 -0.1 752,667 + -0.6 752,694 + -2.3 752,694 + -0.5 752,771 - HP15_744 0.18 -0.1 752,775 - HP15_744 0.18 +3.0 752,821 - HP15_744 0.24 -0.6 752,830 + +0.3 752,835 + HP15_744 0.25 -0.4 752,985 + HP15_744 0.43 -2.8 752,993 - HP15_744 0.44 +1.2 753,022 + HP15_744 0.47 +0.9 753,058 - HP15_744 0.51 +1.1 753,100 - HP15_744 0.56 -0.7 753,107 + HP15_744 0.57 +1.8 753,107 + HP15_744 0.57 -2.1 753,110 - HP15_744 0.57 +0.2 753,115 - HP15_744 0.58 -1.7 753,115 - HP15_744 0.58 -1.3 753,219 - HP15_744 0.70 -0.7 753,300 + HP15_744 0.79 -1.0 753,300 + HP15_744 0.79 -0.6 753,347 + HP15_744 0.85 -0.2 753,412 + -2.1 753,560 + -0.6 753,575 - HP15_745 0.10 -0.2 753,635 + HP15_745 0.18 -0.3 753,635 + HP15_745 0.18 -1.2 753,754 - HP15_745 0.34 -0.5 753,863 - HP15_745 0.48 -1.9 753,863 - -0.9 753,934 + HP15_745 0.57 +2.2 754,043 + HP15_745 0.72 +0.8 754,072 + HP15_745 0.76 +1.7 754,175 + HP15_745 0.89 +1.6 754,185 + -0.8 754,193 - +0.2 754,335 - -1.5 754,382 + -0.8
Or see this region's nucleotide sequence