Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_734 and HP15_735 overlap by 4 nucleotides HP15_735 and HP15_736 overlap by 1 nucleotides HP15_736 and HP15_737 are separated by 115 nucleotides
HP15_734: HP15_734 - septum site-determining protein MinC, at 743,854 to 744,615
_734
HP15_735: HP15_735 - type III effector HopPmaJ, at 744,612 to 745,001
_735
HP15_736: HP15_736 - protein containing DUF1244, at 745,001 to 745,279
_736
HP15_737: HP15_737 - DNA polymerase IV, at 745,395 to 746,459
_737
Position (kb) 745
746 Strain fitness (log2 ratio) -2
-1
0
1
2 at 744.043 kb on + strand, within HP15_734 at 744.418 kb on + strand, within HP15_734 at 744.424 kb on - strand, within HP15_734 at 744.546 kb on - strand at 744.546 kb on - strand at 744.650 kb on + strand at 744.850 kb on - strand, within HP15_735 at 744.889 kb on + strand, within HP15_735 at 744.931 kb on - strand, within HP15_735 at 745.131 kb on + strand, within HP15_736 at 745.131 kb on + strand, within HP15_736 at 745.227 kb on - strand, within HP15_736 at 745.443 kb on + strand at 745.443 kb on + strand at 745.451 kb on - strand at 745.476 kb on - strand at 745.501 kb on - strand at 745.612 kb on - strand, within HP15_737 at 745.639 kb on - strand, within HP15_737 at 745.649 kb on - strand, within HP15_737 at 745.650 kb on - strand, within HP15_737 at 745.731 kb on - strand, within HP15_737 at 745.923 kb on + strand, within HP15_737 at 745.940 kb on + strand, within HP15_737 at 745.986 kb on + strand, within HP15_737 at 745.994 kb on - strand, within HP15_737 at 746.051 kb on + strand, within HP15_737 at 746.051 kb on + strand, within HP15_737 at 746.088 kb on - strand, within HP15_737 at 746.141 kb on - strand, within HP15_737 at 746.189 kb on - strand, within HP15_737 at 746.189 kb on - strand, within HP15_737
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 744,043 + HP15_734 0.25 +0.2 744,418 + HP15_734 0.74 +1.5 744,424 - HP15_734 0.75 +0.1 744,546 - +0.8 744,546 - +1.4 744,650 + -0.7 744,850 - HP15_735 0.61 -0.3 744,889 + HP15_735 0.71 +2.1 744,931 - HP15_735 0.82 -0.3 745,131 + HP15_736 0.47 +0.3 745,131 + HP15_736 0.47 +1.7 745,227 - HP15_736 0.81 -0.7 745,443 + -0.7 745,443 + +2.5 745,451 - +0.4 745,476 - -0.9 745,501 - +0.9 745,612 - HP15_737 0.20 +1.8 745,639 - HP15_737 0.23 +0.0 745,649 - HP15_737 0.24 -0.0 745,650 - HP15_737 0.24 +0.8 745,731 - HP15_737 0.32 +1.9 745,923 + HP15_737 0.50 +1.1 745,940 + HP15_737 0.51 +0.2 745,986 + HP15_737 0.55 +1.3 745,994 - HP15_737 0.56 +2.2 746,051 + HP15_737 0.62 +1.6 746,051 + HP15_737 0.62 -1.8 746,088 - HP15_737 0.65 +1.4 746,141 - HP15_737 0.70 +1.2 746,189 - HP15_737 0.75 +2.1 746,189 - HP15_737 0.75 -1.4
Or see this region's nucleotide sequence