Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_664 and HP15_665 are separated by 51 nucleotides HP15_665 and HP15_666 overlap by 1 nucleotides HP15_666 and HP15_667 overlap by 25 nucleotides HP15_667 and HP15_668 are separated by 1 nucleotides HP15_668 and HP15_669 overlap by 1 nucleotides
HP15_664: HP15_664 - GPW/gp25, at 685,549 to 685,887
_664
HP15_665: HP15_665 - phage-related baseplate assembly protein V, at 685,939 to 686,724
_665
HP15_666: HP15_666 - conserved hypothetical protein, at 686,724 to 687,284
_666
HP15_667: HP15_667 - prophage LambdaW5, minor tail protein Z-like protein, at 687,260 to 687,802
_667
HP15_668: HP15_668 - conserved hypothetical protein, at 687,804 to 688,115
_668
HP15_669: HP15_669 - protein containing Rho termination factor, N-terminal domain, at 688,115 to 688,414
_669
Position (kb) 686
687
688 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 685.735 kb on - strand, within HP15_664 at 685.777 kb on - strand, within HP15_664 at 685.889 kb on - strand at 686.031 kb on + strand, within HP15_665 at 686.103 kb on - strand, within HP15_665 at 686.174 kb on - strand, within HP15_665 at 686.397 kb on + strand, within HP15_665 at 686.428 kb on + strand, within HP15_665 at 686.428 kb on + strand, within HP15_665 at 686.428 kb on + strand, within HP15_665 at 686.428 kb on + strand, within HP15_665 at 686.428 kb on + strand, within HP15_665 at 686.436 kb on - strand, within HP15_665 at 686.436 kb on - strand, within HP15_665 at 686.436 kb on - strand, within HP15_665 at 686.436 kb on - strand, within HP15_665 at 686.436 kb on - strand, within HP15_665 at 686.456 kb on + strand, within HP15_665 at 686.456 kb on + strand, within HP15_665 at 686.459 kb on - strand, within HP15_665 at 686.469 kb on + strand, within HP15_665 at 686.492 kb on + strand, within HP15_665 at 686.618 kb on + strand, within HP15_665 at 686.709 kb on + strand at 686.741 kb on - strand at 686.766 kb on + strand at 686.777 kb on + strand at 686.787 kb on - strand, within HP15_666 at 686.802 kb on - strand, within HP15_666 at 686.809 kb on - strand, within HP15_666 at 686.839 kb on + strand, within HP15_666 at 686.872 kb on + strand, within HP15_666 at 686.872 kb on + strand, within HP15_666 at 686.880 kb on - strand, within HP15_666 at 686.903 kb on - strand, within HP15_666 at 686.912 kb on - strand, within HP15_666 at 686.949 kb on - strand, within HP15_666 at 687.036 kb on - strand, within HP15_666 at 687.140 kb on + strand, within HP15_666 at 687.213 kb on - strand, within HP15_666 at 687.284 kb on + strand at 687.354 kb on + strand, within HP15_667 at 687.354 kb on + strand, within HP15_667 at 687.425 kb on + strand, within HP15_667 at 687.425 kb on + strand, within HP15_667 at 687.433 kb on + strand, within HP15_667 at 687.433 kb on - strand, within HP15_667 at 687.433 kb on - strand, within HP15_667 at 687.455 kb on - strand, within HP15_667 at 687.512 kb on - strand, within HP15_667 at 687.519 kb on + strand, within HP15_667 at 687.526 kb on + strand, within HP15_667 at 687.529 kb on - strand, within HP15_667 at 687.544 kb on + strand, within HP15_667 at 687.552 kb on - strand, within HP15_667 at 687.782 kb on - strand at 687.848 kb on + strand, within HP15_668 at 687.867 kb on + strand, within HP15_668 at 687.875 kb on - strand, within HP15_668 at 687.997 kb on - strand, within HP15_668 at 688.048 kb on + strand, within HP15_668 at 688.057 kb on - strand, within HP15_668 at 688.164 kb on - strand, within HP15_669 at 688.196 kb on + strand, within HP15_669 at 688.267 kb on - strand, within HP15_669 at 688.278 kb on + strand, within HP15_669
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 685,735 - HP15_664 0.55 +0.8 685,777 - HP15_664 0.67 +2.1 685,889 - -2.8 686,031 + HP15_665 0.12 +0.6 686,103 - HP15_665 0.21 -0.1 686,174 - HP15_665 0.30 -0.7 686,397 + HP15_665 0.58 -0.0 686,428 + HP15_665 0.62 -0.2 686,428 + HP15_665 0.62 -1.3 686,428 + HP15_665 0.62 +1.8 686,428 + HP15_665 0.62 +1.9 686,428 + HP15_665 0.62 +0.8 686,436 - HP15_665 0.63 -0.7 686,436 - HP15_665 0.63 +1.0 686,436 - HP15_665 0.63 -0.8 686,436 - HP15_665 0.63 -1.8 686,436 - HP15_665 0.63 +1.0 686,456 + HP15_665 0.66 +0.2 686,456 + HP15_665 0.66 +0.2 686,459 - HP15_665 0.66 -0.3 686,469 + HP15_665 0.67 +0.4 686,492 + HP15_665 0.70 -0.0 686,618 + HP15_665 0.86 +1.6 686,709 + -0.2 686,741 - +0.8 686,766 + -1.5 686,777 + -0.4 686,787 - HP15_666 0.11 -0.2 686,802 - HP15_666 0.14 -1.0 686,809 - HP15_666 0.15 -2.8 686,839 + HP15_666 0.20 -2.4 686,872 + HP15_666 0.26 +3.8 686,872 + HP15_666 0.26 -0.6 686,880 - HP15_666 0.28 -0.2 686,903 - HP15_666 0.32 +0.1 686,912 - HP15_666 0.34 -1.1 686,949 - HP15_666 0.40 -0.3 687,036 - HP15_666 0.56 -0.2 687,140 + HP15_666 0.74 -0.3 687,213 - HP15_666 0.87 -0.5 687,284 + -0.4 687,354 + HP15_667 0.17 -0.8 687,354 + HP15_667 0.17 +2.4 687,425 + HP15_667 0.30 +1.8 687,425 + HP15_667 0.30 -0.5 687,433 + HP15_667 0.32 +0.2 687,433 - HP15_667 0.32 +3.8 687,433 - HP15_667 0.32 +0.2 687,455 - HP15_667 0.36 -0.0 687,512 - HP15_667 0.46 -1.3 687,519 + HP15_667 0.48 +3.0 687,526 + HP15_667 0.49 -0.0 687,529 - HP15_667 0.50 -0.1 687,544 + HP15_667 0.52 +1.3 687,552 - HP15_667 0.54 -0.8 687,782 - -0.0 687,848 + HP15_668 0.14 -1.8 687,867 + HP15_668 0.20 +1.0 687,875 - HP15_668 0.23 +1.0 687,997 - HP15_668 0.62 +0.3 688,048 + HP15_668 0.78 -0.9 688,057 - HP15_668 0.81 -0.7 688,164 - HP15_669 0.16 -2.3 688,196 + HP15_669 0.27 -0.4 688,267 - HP15_669 0.51 +0.5 688,278 + HP15_669 0.54 -0.5
Or see this region's nucleotide sequence