Strain Fitness in Marinobacter adhaerens HP15 around HP15_66

Experiment: monoculture; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_65 and HP15_66 are separated by 316 nucleotidesHP15_66 and HP15_67 are separated by 333 nucleotidesHP15_67 and HP15_68 are separated by 215 nucleotides HP15_65: HP15_65 - dihydrolipoamide dehydrogenase, at 69,088 to 70,473 _65 HP15_66: HP15_66 - adenylate cyclase, at 70,790 to 72,199 _66 HP15_67: HP15_67 - short-chain dehydrogenase/reductase SDR, at 72,533 to 72,934 _67 HP15_68: HP15_68 - sensory box/FOG: EAL domain/GGDEF domain containing protein, at 73,150 to 76,638 _68 Position (kb) 70 71 72 73Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 69.815 kb on - strand, within HP15_65at 69.842 kb on + strand, within HP15_65at 69.843 kb on + strand, within HP15_65at 69.852 kb on - strand, within HP15_65at 69.913 kb on + strand, within HP15_65at 69.921 kb on - strand, within HP15_65at 69.945 kb on + strand, within HP15_65at 69.945 kb on + strand, within HP15_65at 69.945 kb on + strand, within HP15_65at 69.962 kb on + strand, within HP15_65at 70.044 kb on - strand, within HP15_65at 70.069 kb on + strand, within HP15_65at 70.076 kb on - strand, within HP15_65at 70.133 kb on + strand, within HP15_65at 70.178 kb on - strand, within HP15_65at 70.179 kb on + strand, within HP15_65at 70.179 kb on + strand, within HP15_65at 70.223 kb on - strand, within HP15_65at 70.228 kb on - strand, within HP15_65at 70.266 kb on + strand, within HP15_65at 70.527 kb on - strandat 70.527 kb on - strandat 70.557 kb on - strandat 70.637 kb on + strandat 70.645 kb on - strandat 70.753 kb on - strandat 70.758 kb on - strandat 70.765 kb on + strandat 70.923 kb on - strandat 71.050 kb on - strand, within HP15_66at 71.079 kb on - strand, within HP15_66at 71.121 kb on + strand, within HP15_66at 71.126 kb on + strand, within HP15_66at 71.188 kb on - strand, within HP15_66at 71.222 kb on - strand, within HP15_66at 71.236 kb on + strand, within HP15_66at 71.303 kb on + strand, within HP15_66at 71.328 kb on + strand, within HP15_66at 71.335 kb on - strand, within HP15_66at 71.335 kb on - strand, within HP15_66at 71.352 kb on + strand, within HP15_66at 71.386 kb on + strand, within HP15_66at 71.423 kb on + strand, within HP15_66at 71.446 kb on - strand, within HP15_66at 71.495 kb on - strand, within HP15_66at 71.495 kb on - strand, within HP15_66at 71.561 kb on - strand, within HP15_66at 71.561 kb on - strand, within HP15_66at 71.709 kb on - strand, within HP15_66at 71.715 kb on + strand, within HP15_66at 71.720 kb on + strand, within HP15_66at 71.728 kb on - strand, within HP15_66at 71.736 kb on + strand, within HP15_66at 71.888 kb on - strand, within HP15_66at 71.907 kb on + strand, within HP15_66at 71.907 kb on + strand, within HP15_66at 72.087 kb on - strandat 72.094 kb on - strandat 72.167 kb on + strandat 72.167 kb on + strandat 72.284 kb on + strandat 72.292 kb on - strandat 72.292 kb on - strandat 72.413 kb on + strandat 72.555 kb on - strandat 72.584 kb on - strand, within HP15_67at 72.598 kb on + strand, within HP15_67at 72.636 kb on - strand, within HP15_67at 72.636 kb on - strand, within HP15_67at 72.638 kb on + strand, within HP15_67at 72.643 kb on + strand, within HP15_67at 72.643 kb on + strand, within HP15_67at 72.649 kb on - strand, within HP15_67at 72.665 kb on + strand, within HP15_67at 72.673 kb on - strand, within HP15_67at 72.739 kb on + strand, within HP15_67at 73.065 kb on - strandat 73.084 kb on + strandat 73.107 kb on + strandat 73.115 kb on - strandat 73.156 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6
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69,815 - HP15_65 0.52 +0.5
69,842 + HP15_65 0.54 +0.1
69,843 + HP15_65 0.54 -2.1
69,852 - HP15_65 0.55 -2.2
69,913 + HP15_65 0.60 -0.1
69,921 - HP15_65 0.60 +4.8
69,945 + HP15_65 0.62 -1.8
69,945 + HP15_65 0.62 -1.8
69,945 + HP15_65 0.62 -1.4
69,962 + HP15_65 0.63 -1.4
70,044 - HP15_65 0.69 -0.7
70,069 + HP15_65 0.71 +0.9
70,076 - HP15_65 0.71 -0.1
70,133 + HP15_65 0.75 +1.8
70,178 - HP15_65 0.79 -0.2
70,179 + HP15_65 0.79 -0.5
70,179 + HP15_65 0.79 -0.2
70,223 - HP15_65 0.82 -1.0
70,228 - HP15_65 0.82 -0.8
70,266 + HP15_65 0.85 -1.9
70,527 - +2.4
70,527 - -1.0
70,557 - +1.7
70,637 + -0.9
70,645 - +1.1
70,753 - +1.3
70,758 - +1.7
70,765 + -1.1
70,923 - -1.7
71,050 - HP15_66 0.18 +1.2
71,079 - HP15_66 0.20 -1.3
71,121 + HP15_66 0.23 -0.1
71,126 + HP15_66 0.24 -0.6
71,188 - HP15_66 0.28 +2.8
71,222 - HP15_66 0.31 -0.2
71,236 + HP15_66 0.32 -0.1
71,303 + HP15_66 0.36 +2.0
71,328 + HP15_66 0.38 +1.3
71,335 - HP15_66 0.39 -0.4
71,335 - HP15_66 0.39 -0.7
71,352 + HP15_66 0.40 +0.4
71,386 + HP15_66 0.42 -0.3
71,423 + HP15_66 0.45 -0.2
71,446 - HP15_66 0.47 -1.6
71,495 - HP15_66 0.50 -1.2
71,495 - HP15_66 0.50 -0.1
71,561 - HP15_66 0.55 -0.2
71,561 - HP15_66 0.55 +0.2
71,709 - HP15_66 0.65 -1.4
71,715 + HP15_66 0.66 -1.6
71,720 + HP15_66 0.66 -0.9
71,728 - HP15_66 0.67 +0.2
71,736 + HP15_66 0.67 +2.1
71,888 - HP15_66 0.78 +2.2
71,907 + HP15_66 0.79 +1.6
71,907 + HP15_66 0.79 -1.5
72,087 - +0.5
72,094 - +0.3
72,167 + +1.6
72,167 + +0.7
72,284 + +0.1
72,292 - -0.3
72,292 - +2.2
72,413 + +2.6
72,555 - +1.8
72,584 - HP15_67 0.13 +1.2
72,598 + HP15_67 0.16 +0.7
72,636 - HP15_67 0.26 -1.4
72,636 - HP15_67 0.26 +2.5
72,638 + HP15_67 0.26 -0.0
72,643 + HP15_67 0.27 +0.7
72,643 + HP15_67 0.27 +0.2
72,649 - HP15_67 0.29 +1.1
72,665 + HP15_67 0.33 -0.0
72,673 - HP15_67 0.35 -1.1
72,739 + HP15_67 0.51 -0.4
73,065 - -0.1
73,084 + +0.5
73,107 + +0.3
73,115 - -0.1
73,156 + +0.2

Or see this region's nucleotide sequence