Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_612 and HP15_613 are separated by 443 nucleotides HP15_613 and HP15_614 are separated by 114 nucleotides HP15_614 and HP15_615 are separated by 89 nucleotides
HP15_612: HP15_612 - unusual protein kinase, at 632,489 to 633,934
_612
HP15_613: HP15_613 - methyl-accepting chemotaxis sensory transducer, at 634,378 to 636,504
_613
HP15_614: HP15_614 - protein containing glutaredoxin domain, at 636,619 to 636,879
_614
HP15_615: HP15_615 - 6-phosphofructokinase, at 636,969 to 638,231
_615
Position (kb) 634
635
636
637 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 633.419 kb on + strand, within HP15_612 at 633.419 kb on + strand, within HP15_612 at 633.460 kb on + strand, within HP15_612 at 633.463 kb on - strand, within HP15_612 at 633.879 kb on - strand at 633.922 kb on - strand at 634.166 kb on + strand at 634.170 kb on + strand at 634.178 kb on + strand at 634.217 kb on + strand at 634.225 kb on - strand at 634.225 kb on - strand at 634.356 kb on - strand at 634.420 kb on - strand at 634.483 kb on + strand at 634.508 kb on + strand at 634.519 kb on + strand at 634.527 kb on - strand at 634.545 kb on - strand at 634.655 kb on + strand, within HP15_613 at 634.691 kb on + strand, within HP15_613 at 634.740 kb on - strand, within HP15_613 at 634.790 kb on + strand, within HP15_613 at 634.956 kb on + strand, within HP15_613 at 635.009 kb on + strand, within HP15_613 at 635.012 kb on - strand, within HP15_613 at 635.012 kb on - strand, within HP15_613 at 635.239 kb on + strand, within HP15_613 at 635.318 kb on - strand, within HP15_613 at 635.342 kb on - strand, within HP15_613 at 635.769 kb on - strand, within HP15_613 at 635.769 kb on - strand, within HP15_613 at 635.863 kb on + strand, within HP15_613 at 635.887 kb on - strand, within HP15_613 at 635.946 kb on + strand, within HP15_613 at 636.115 kb on + strand, within HP15_613 at 636.122 kb on - strand, within HP15_613 at 636.187 kb on + strand, within HP15_613 at 636.442 kb on + strand at 636.456 kb on - strand at 636.461 kb on - strand at 636.500 kb on - strand at 636.702 kb on + strand, within HP15_614 at 636.777 kb on + strand, within HP15_614 at 636.860 kb on + strand at 636.912 kb on + strand at 636.928 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 633,419 + HP15_612 0.64 +1.3 633,419 + HP15_612 0.64 -0.7 633,460 + HP15_612 0.67 +1.0 633,463 - HP15_612 0.67 -1.0 633,879 - -0.4 633,922 - +0.6 634,166 + -2.2 634,170 + -0.9 634,178 + +2.9 634,217 + +1.6 634,225 - -0.4 634,225 - -1.2 634,356 - -0.6 634,420 - -1.0 634,483 + +1.6 634,508 + +0.4 634,519 + +3.8 634,527 - -0.8 634,545 - +2.0 634,655 + HP15_613 0.13 -0.2 634,691 + HP15_613 0.15 +0.3 634,740 - HP15_613 0.17 -1.5 634,790 + HP15_613 0.19 -1.2 634,956 + HP15_613 0.27 +0.5 635,009 + HP15_613 0.30 -0.0 635,012 - HP15_613 0.30 +1.6 635,012 - HP15_613 0.30 -2.0 635,239 + HP15_613 0.40 +1.0 635,318 - HP15_613 0.44 +0.4 635,342 - HP15_613 0.45 -0.6 635,769 - HP15_613 0.65 -0.0 635,769 - HP15_613 0.65 -1.0 635,863 + HP15_613 0.70 +0.8 635,887 - HP15_613 0.71 -1.2 635,946 + HP15_613 0.74 -1.5 636,115 + HP15_613 0.82 +0.9 636,122 - HP15_613 0.82 +2.2 636,187 + HP15_613 0.85 -0.6 636,442 + +1.7 636,456 - -0.7 636,461 - -0.5 636,500 - +0.2 636,702 + HP15_614 0.32 -2.1 636,777 + HP15_614 0.61 -0.1 636,860 + -1.2 636,912 + +0.5 636,928 - +0.3
Or see this region's nucleotide sequence