Strain Fitness in Marinobacter adhaerens HP15 around HP15_62

Experiment: monoculture; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_61 and HP15_62 are separated by 41 nucleotidesHP15_62 and HP15_63 are separated by 63 nucleotidesHP15_63 and HP15_64 are separated by 17 nucleotides HP15_61: HP15_61 - chain A, alpha-keto acid dehydrogenase-like protein, at 65,530 to 66,759 _61 HP15_62: HP15_62 - hypothetical protein, at 66,801 to 66,905 _62 HP15_63: HP15_63 - 2-oxoisovalerate dehydrogenase, E1 component, beta subunit, at 66,969 to 67,775 _63 HP15_64: HP15_64 - catalytic domain of components of various dehydrogenase complexes, at 67,793 to 69,091 _64 Position (kb) 66 67Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 65.876 kb on - strand, within HP15_61at 65.896 kb on - strand, within HP15_61at 65.898 kb on + strand, within HP15_61at 65.906 kb on - strand, within HP15_61at 65.906 kb on - strand, within HP15_61at 65.906 kb on - strand, within HP15_61at 65.942 kb on + strand, within HP15_61at 65.950 kb on - strand, within HP15_61at 65.950 kb on - strand, within HP15_61at 65.954 kb on + strand, within HP15_61at 66.025 kb on + strand, within HP15_61at 66.105 kb on + strand, within HP15_61at 66.105 kb on + strand, within HP15_61at 66.105 kb on + strand, within HP15_61at 66.105 kb on + strand, within HP15_61at 66.105 kb on + strand, within HP15_61at 66.113 kb on - strand, within HP15_61at 66.113 kb on - strand, within HP15_61at 66.113 kb on - strand, within HP15_61at 66.113 kb on - strand, within HP15_61at 66.113 kb on - strand, within HP15_61at 66.161 kb on - strand, within HP15_61at 66.192 kb on - strand, within HP15_61at 66.199 kb on + strand, within HP15_61at 66.224 kb on - strand, within HP15_61at 66.225 kb on - strand, within HP15_61at 66.230 kb on + strand, within HP15_61at 66.283 kb on - strand, within HP15_61at 66.447 kb on + strand, within HP15_61at 66.472 kb on + strand, within HP15_61at 66.489 kb on + strand, within HP15_61at 66.489 kb on + strand, within HP15_61at 66.489 kb on + strand, within HP15_61at 66.497 kb on - strand, within HP15_61at 66.497 kb on - strand, within HP15_61at 66.514 kb on - strand, within HP15_61at 66.520 kb on + strand, within HP15_61at 66.521 kb on - strand, within HP15_61at 66.561 kb on - strand, within HP15_61at 66.563 kb on + strand, within HP15_61at 66.563 kb on + strand, within HP15_61at 66.620 kb on - strand, within HP15_61at 66.642 kb on + strandat 66.659 kb on + strandat 66.677 kb on - strandat 66.736 kb on - strandat 66.788 kb on + strandat 66.799 kb on - strandat 66.839 kb on - strand, within HP15_62at 66.844 kb on + strand, within HP15_62at 66.919 kb on + strandat 66.927 kb on - strandat 66.958 kb on - strandat 66.984 kb on - strandat 66.984 kb on - strandat 67.022 kb on - strandat 67.022 kb on - strandat 67.137 kb on + strand, within HP15_63at 67.186 kb on - strand, within HP15_63at 67.441 kb on + strand, within HP15_63at 67.441 kb on - strand, within HP15_63at 67.559 kb on - strand, within HP15_63at 67.570 kb on + strand, within HP15_63at 67.580 kb on + strand, within HP15_63at 67.604 kb on + strand, within HP15_63at 67.612 kb on - strand, within HP15_63at 67.612 kb on - strand, within HP15_63at 67.617 kb on - strand, within HP15_63at 67.689 kb on + strand, within HP15_63at 67.692 kb on - strand, within HP15_63at 67.882 kb on + strandat 67.898 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6
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65,876 - HP15_61 0.28 +2.0
65,896 - HP15_61 0.30 -1.4
65,898 + HP15_61 0.30 -0.4
65,906 - HP15_61 0.31 -0.4
65,906 - HP15_61 0.31 -1.3
65,906 - HP15_61 0.31 +0.3
65,942 + HP15_61 0.33 +3.8
65,950 - HP15_61 0.34 -0.7
65,950 - HP15_61 0.34 +0.7
65,954 + HP15_61 0.34 -1.5
66,025 + HP15_61 0.40 +1.4
66,105 + HP15_61 0.47 +1.7
66,105 + HP15_61 0.47 +1.2
66,105 + HP15_61 0.47 +1.6
66,105 + HP15_61 0.47 -2.2
66,105 + HP15_61 0.47 +2.0
66,113 - HP15_61 0.47 -0.5
66,113 - HP15_61 0.47 -2.0
66,113 - HP15_61 0.47 -0.4
66,113 - HP15_61 0.47 -0.8
66,113 - HP15_61 0.47 +0.1
66,161 - HP15_61 0.51 -0.8
66,192 - HP15_61 0.54 +0.3
66,199 + HP15_61 0.54 -2.2
66,224 - HP15_61 0.56 +0.9
66,225 - HP15_61 0.57 +1.7
66,230 + HP15_61 0.57 +2.0
66,283 - HP15_61 0.61 -0.4
66,447 + HP15_61 0.75 -2.4
66,472 + HP15_61 0.77 +0.8
66,489 + HP15_61 0.78 +1.0
66,489 + HP15_61 0.78 -1.0
66,489 + HP15_61 0.78 -1.5
66,497 - HP15_61 0.79 +0.1
66,497 - HP15_61 0.79 +0.1
66,514 - HP15_61 0.80 +0.2
66,520 + HP15_61 0.80 -1.2
66,521 - HP15_61 0.81 +1.0
66,561 - HP15_61 0.84 +1.5
66,563 + HP15_61 0.84 +0.8
66,563 + HP15_61 0.84 +2.8
66,620 - HP15_61 0.89 +2.6
66,642 + -0.8
66,659 + -1.7
66,677 - -0.2
66,736 - +2.4
66,788 + +1.2
66,799 - +0.0
66,839 - HP15_62 0.36 -0.6
66,844 + HP15_62 0.41 -0.3
66,919 + -1.3
66,927 - -1.7
66,958 - +0.2
66,984 - +1.4
66,984 - +1.3
67,022 - -0.9
67,022 - -1.3
67,137 + HP15_63 0.21 +1.1
67,186 - HP15_63 0.27 -1.0
67,441 + HP15_63 0.58 -0.4
67,441 - HP15_63 0.58 +1.4
67,559 - HP15_63 0.73 +0.8
67,570 + HP15_63 0.74 -0.3
67,580 + HP15_63 0.76 +0.0
67,604 + HP15_63 0.79 -2.0
67,612 - HP15_63 0.80 -0.9
67,612 - HP15_63 0.80 -0.5
67,617 - HP15_63 0.80 +0.1
67,689 + HP15_63 0.89 -1.8
67,692 - HP15_63 0.90 -0.7
67,882 + +1.0
67,898 + +0.2

Or see this region's nucleotide sequence