Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_598 and HP15_599 overlap by 4 nucleotides HP15_599 and HP15_600 overlap by 4 nucleotides HP15_600 and HP15_601 are separated by 173 nucleotides
HP15_598: HP15_598 - phosphoesterase, PA-phosphatase, at 618,473 to 619,930
_598
HP15_599: HP15_599 - membrane protein containing Diguanylate cyclase, predicted domains, at 619,927 to 620,925
_599
HP15_600: HP15_600 - GGDEF domain protein, at 620,922 to 621,938
_600
HP15_601: HP15_601 - gamma-glutamyl phosphate reductase, at 622,112 to 623,368
_601
Position (kb) 620
621
622 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 619.950 kb on + strand at 620.025 kb on + strand at 620.039 kb on + strand, within HP15_599 at 620.195 kb on + strand, within HP15_599 at 620.202 kb on + strand, within HP15_599 at 620.210 kb on - strand, within HP15_599 at 620.210 kb on - strand, within HP15_599 at 620.233 kb on - strand, within HP15_599 at 620.254 kb on - strand, within HP15_599 at 620.254 kb on - strand, within HP15_599 at 620.340 kb on - strand, within HP15_599 at 620.343 kb on - strand, within HP15_599 at 620.436 kb on + strand, within HP15_599 at 620.602 kb on - strand, within HP15_599 at 620.701 kb on - strand, within HP15_599 at 620.706 kb on - strand, within HP15_599 at 620.732 kb on + strand, within HP15_599 at 620.881 kb on - strand at 620.895 kb on + strand at 620.896 kb on + strand at 620.935 kb on - strand at 620.951 kb on + strand at 620.980 kb on + strand at 621.006 kb on + strand at 621.011 kb on + strand at 621.029 kb on - strand, within HP15_600 at 621.222 kb on - strand, within HP15_600 at 621.323 kb on - strand, within HP15_600 at 621.371 kb on - strand, within HP15_600 at 621.556 kb on - strand, within HP15_600 at 621.646 kb on + strand, within HP15_600 at 621.646 kb on + strand, within HP15_600 at 621.681 kb on + strand, within HP15_600 at 621.831 kb on + strand, within HP15_600 at 621.839 kb on - strand at 621.853 kb on + strand at 621.861 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 619,950 + +2.6 620,025 + +1.6 620,039 + HP15_599 0.11 +1.7 620,195 + HP15_599 0.27 +3.0 620,202 + HP15_599 0.28 +0.8 620,210 - HP15_599 0.28 +2.5 620,210 - HP15_599 0.28 +3.3 620,233 - HP15_599 0.31 +1.6 620,254 - HP15_599 0.33 +2.9 620,254 - HP15_599 0.33 +2.6 620,340 - HP15_599 0.41 -1.7 620,343 - HP15_599 0.42 +3.3 620,436 + HP15_599 0.51 +2.5 620,602 - HP15_599 0.68 +3.0 620,701 - HP15_599 0.77 +0.5 620,706 - HP15_599 0.78 +3.8 620,732 + HP15_599 0.81 +3.5 620,881 - +3.0 620,895 + +3.7 620,896 + +2.9 620,935 - -1.1 620,951 + +3.8 620,980 + +0.8 621,006 + +2.9 621,011 + +0.3 621,029 - HP15_600 0.11 +1.5 621,222 - HP15_600 0.29 +2.9 621,323 - HP15_600 0.39 +2.5 621,371 - HP15_600 0.44 +1.4 621,556 - HP15_600 0.62 +1.1 621,646 + HP15_600 0.71 +3.0 621,646 + HP15_600 0.71 +0.5 621,681 + HP15_600 0.75 +2.4 621,831 + HP15_600 0.89 +1.7 621,839 - +1.8 621,853 + +1.2 621,861 - +1.0
Or see this region's nucleotide sequence