Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_501 and HP15_502 are separated by 59 nucleotides HP15_502 and HP15_503 are separated by 115 nucleotides
HP15_501: HP15_501 - acyltransferase, WS/DGAT/MGAT, at 513,098 to 514,684
_501
HP15_502: HP15_502 - transcriptional regulator, LysR family protein, at 514,744 to 515,655
_502
HP15_503: HP15_503 - glutathione S-transferase protein, at 515,771 to 516,757
_503
Position (kb) 514
515
516 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 513.802 kb on - strand, within HP15_501 at 514.060 kb on - strand, within HP15_501 at 514.300 kb on - strand, within HP15_501 at 514.347 kb on - strand, within HP15_501 at 514.791 kb on - strand at 514.808 kb on + strand at 514.816 kb on - strand at 514.816 kb on - strand at 514.816 kb on - strand at 514.816 kb on - strand at 514.979 kb on - strand, within HP15_502 at 515.212 kb on + strand, within HP15_502 at 515.358 kb on - strand, within HP15_502 at 515.375 kb on + strand, within HP15_502 at 515.383 kb on - strand, within HP15_502 at 515.433 kb on + strand, within HP15_502 at 515.473 kb on - strand, within HP15_502 at 515.540 kb on + strand, within HP15_502 at 515.548 kb on - strand, within HP15_502 at 515.631 kb on + strand at 515.639 kb on - strand at 515.639 kb on - strand at 515.678 kb on + strand at 515.777 kb on - strand at 515.958 kb on + strand, within HP15_503 at 516.007 kb on - strand, within HP15_503 at 516.034 kb on - strand, within HP15_503 at 516.121 kb on + strand, within HP15_503 at 516.121 kb on + strand, within HP15_503 at 516.129 kb on - strand, within HP15_503 at 516.129 kb on - strand, within HP15_503 at 516.135 kb on - strand, within HP15_503 at 516.164 kb on - strand, within HP15_503 at 516.253 kb on + strand, within HP15_503 at 516.260 kb on - strand, within HP15_503 at 516.382 kb on + strand, within HP15_503 at 516.395 kb on - strand, within HP15_503 at 516.406 kb on - strand at 516.429 kb on + strand, within HP15_503 at 516.450 kb on - strand, within HP15_503 at 516.535 kb on - strand, within HP15_503 at 516.646 kb on + strand, within HP15_503
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 513,802 - HP15_501 0.44 +0.6 514,060 - HP15_501 0.61 +0.1 514,300 - HP15_501 0.76 +0.4 514,347 - HP15_501 0.79 +2.8 514,791 - -0.4 514,808 + -1.7 514,816 - -0.9 514,816 - +0.2 514,816 - -0.1 514,816 - +0.0 514,979 - HP15_502 0.26 +0.0 515,212 + HP15_502 0.51 -0.5 515,358 - HP15_502 0.67 -0.5 515,375 + HP15_502 0.69 +0.0 515,383 - HP15_502 0.70 +0.1 515,433 + HP15_502 0.76 -0.4 515,473 - HP15_502 0.80 +0.8 515,540 + HP15_502 0.87 -1.9 515,548 - HP15_502 0.88 +1.4 515,631 + +1.9 515,639 - -0.8 515,639 - -0.6 515,678 + +0.1 515,777 - -1.4 515,958 + HP15_503 0.19 +0.3 516,007 - HP15_503 0.24 +0.8 516,034 - HP15_503 0.27 -1.4 516,121 + HP15_503 0.35 +0.8 516,121 + HP15_503 0.35 -1.6 516,129 - HP15_503 0.36 +0.3 516,129 - HP15_503 0.36 -1.2 516,135 - HP15_503 0.37 +0.1 516,164 - HP15_503 0.40 -1.2 516,253 + HP15_503 0.49 -0.1 516,260 - HP15_503 0.50 +1.9 516,382 + HP15_503 0.62 +0.5 516,395 - HP15_503 0.63 +0.6 516,406 - +1.3 516,429 + HP15_503 0.67 +2.1 516,450 - HP15_503 0.69 -0.6 516,535 - HP15_503 0.77 +2.6 516,646 + HP15_503 0.89 -0.4
Or see this region's nucleotide sequence