Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_474 and HP15_475 are separated by 13 nucleotides HP15_475 and HP15_476 overlap by 4 nucleotides HP15_476 and HP15_477 overlap by 4 nucleotides
HP15_474: HP15_474 - type IV pilus biogenesis protein PilM, at 485,381 to 486,397
_474
HP15_475: HP15_475 - Tfp pilus assembly protein PilN, at 486,411 to 486,977
_475
HP15_476: HP15_476 - type 4 fimbrial biogenesis protein PilO, at 486,974 to 487,585
_476
HP15_477: HP15_477 - type 4 fimbrial biogenesis protein PilP, at 487,582 to 488,136
_477
Position (kb) 486
487 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 485.515 kb on + strand, within HP15_474 at 485.515 kb on + strand, within HP15_474 at 485.515 kb on + strand, within HP15_474 at 485.534 kb on + strand, within HP15_474 at 485.746 kb on - strand, within HP15_474 at 485.754 kb on - strand, within HP15_474 at 485.778 kb on - strand, within HP15_474 at 485.846 kb on - strand, within HP15_474 at 485.880 kb on + strand, within HP15_474 at 485.888 kb on - strand, within HP15_474 at 485.888 kb on - strand, within HP15_474 at 485.888 kb on - strand, within HP15_474 at 485.888 kb on - strand, within HP15_474 at 485.888 kb on - strand, within HP15_474 at 485.902 kb on + strand, within HP15_474 at 486.094 kb on + strand, within HP15_474 at 486.094 kb on + strand, within HP15_474 at 486.107 kb on + strand, within HP15_474 at 486.134 kb on - strand, within HP15_474 at 486.194 kb on + strand, within HP15_474 at 486.199 kb on + strand, within HP15_474 at 486.229 kb on - strand, within HP15_474 at 486.342 kb on + strand at 486.342 kb on - strand at 486.352 kb on + strand at 486.433 kb on - strand at 486.454 kb on - strand at 486.552 kb on + strand, within HP15_475 at 486.586 kb on - strand, within HP15_475 at 486.619 kb on - strand, within HP15_475 at 486.882 kb on - strand, within HP15_475 at 486.899 kb on - strand, within HP15_475 at 487.660 kb on - strand, within HP15_477 at 487.694 kb on - strand, within HP15_477 at 487.694 kb on - strand, within HP15_477 at 487.701 kb on - strand, within HP15_477 at 487.726 kb on - strand, within HP15_477 at 487.748 kb on - strand, within HP15_477 at 487.869 kb on + strand, within HP15_477 at 487.956 kb on + strand, within HP15_477
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 485,515 + HP15_474 0.13 -1.2 485,515 + HP15_474 0.13 +0.2 485,515 + HP15_474 0.13 +0.1 485,534 + HP15_474 0.15 +0.3 485,746 - HP15_474 0.36 +0.8 485,754 - HP15_474 0.37 +2.0 485,778 - HP15_474 0.39 -0.1 485,846 - HP15_474 0.46 +0.3 485,880 + HP15_474 0.49 +0.8 485,888 - HP15_474 0.50 -0.7 485,888 - HP15_474 0.50 +0.7 485,888 - HP15_474 0.50 -0.3 485,888 - HP15_474 0.50 +1.7 485,888 - HP15_474 0.50 -0.6 485,902 + HP15_474 0.51 +1.3 486,094 + HP15_474 0.70 +2.0 486,094 + HP15_474 0.70 -0.9 486,107 + HP15_474 0.71 -0.4 486,134 - HP15_474 0.74 -0.7 486,194 + HP15_474 0.80 -2.4 486,199 + HP15_474 0.80 -1.4 486,229 - HP15_474 0.83 -0.5 486,342 + +0.1 486,342 - +0.0 486,352 + -2.3 486,433 - -1.9 486,454 - +1.5 486,552 + HP15_475 0.25 +2.4 486,586 - HP15_475 0.31 -0.2 486,619 - HP15_475 0.37 -3.4 486,882 - HP15_475 0.83 +2.0 486,899 - HP15_475 0.86 -0.1 487,660 - HP15_477 0.14 +1.4 487,694 - HP15_477 0.20 -0.1 487,694 - HP15_477 0.20 -0.4 487,701 - HP15_477 0.21 -0.6 487,726 - HP15_477 0.26 -0.1 487,748 - HP15_477 0.30 +0.6 487,869 + HP15_477 0.52 +1.0 487,956 + HP15_477 0.67 -0.9
Or see this region's nucleotide sequence