Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_461 and HP15_462 are separated by 482 nucleotides HP15_462 and HP15_463 are separated by 15 nucleotides HP15_463 and HP15_464 are separated by 122 nucleotides
HP15_461: HP15_461 - Histidinol-phosphatase (EC:3.1.3.15) <small>(from data)</small>, at 466,744 to 467,400
_461
HP15_462: HP15_462 - dinucleoside polyphosphate hydrolase, at 467,883 to 468,104
_462
HP15_463: HP15_463 - fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain protein, at 468,120 to 470,426
_463
HP15_464: HP15_464 - protein containing Patatin domain, at 470,549 to 471,790
_464
Position (kb) 468
469
470
471 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 467.448 kb on + strand at 467.456 kb on - strand at 467.572 kb on - strand at 467.590 kb on + strand at 467.598 kb on - strand at 467.992 kb on + strand, within HP15_462 at 468.038 kb on + strand, within HP15_462 at 468.069 kb on + strand, within HP15_462 at 468.139 kb on + strand at 468.245 kb on + strand at 468.328 kb on + strand at 468.331 kb on - strand at 468.336 kb on - strand at 468.523 kb on + strand, within HP15_463 at 468.541 kb on - strand, within HP15_463 at 468.946 kb on - strand, within HP15_463 at 468.955 kb on + strand, within HP15_463 at 469.037 kb on - strand, within HP15_463 at 469.094 kb on + strand, within HP15_463 at 469.113 kb on + strand, within HP15_463 at 469.113 kb on + strand, within HP15_463 at 469.113 kb on + strand, within HP15_463 at 469.113 kb on + strand, within HP15_463 at 469.121 kb on - strand, within HP15_463 at 469.121 kb on - strand, within HP15_463 at 469.131 kb on - strand, within HP15_463 at 469.169 kb on + strand, within HP15_463 at 469.416 kb on + strand, within HP15_463 at 469.530 kb on - strand, within HP15_463 at 469.736 kb on - strand, within HP15_463 at 469.900 kb on - strand, within HP15_463 at 469.995 kb on + strand, within HP15_463 at 470.041 kb on + strand, within HP15_463 at 470.060 kb on - strand, within HP15_463 at 470.096 kb on + strand, within HP15_463 at 470.311 kb on + strand at 470.365 kb on + strand at 470.373 kb on - strand at 470.433 kb on + strand at 470.451 kb on - strand at 470.451 kb on - strand at 470.462 kb on + strand at 470.504 kb on - strand at 470.547 kb on - strand at 470.547 kb on - strand at 470.589 kb on + strand at 470.620 kb on - strand at 470.851 kb on - strand, within HP15_464 at 471.007 kb on + strand, within HP15_464 at 471.009 kb on + strand, within HP15_464 at 471.020 kb on - strand, within HP15_464 at 471.238 kb on - strand, within HP15_464 at 471.238 kb on - strand, within HP15_464 at 471.256 kb on + strand, within HP15_464 at 471.390 kb on + strand, within HP15_464
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 467,448 + +0.2 467,456 - -0.7 467,572 - -1.9 467,590 + +2.0 467,598 - -3.6 467,992 + HP15_462 0.49 -0.3 468,038 + HP15_462 0.70 -2.4 468,069 + HP15_462 0.84 -0.6 468,139 + +0.3 468,245 + -2.1 468,328 + +0.6 468,331 - -3.2 468,336 - -4.2 468,523 + HP15_463 0.17 -4.0 468,541 - HP15_463 0.18 -1.0 468,946 - HP15_463 0.36 +0.8 468,955 + HP15_463 0.36 -2.1 469,037 - HP15_463 0.40 -1.9 469,094 + HP15_463 0.42 -5.6 469,113 + HP15_463 0.43 -3.7 469,113 + HP15_463 0.43 -3.2 469,113 + HP15_463 0.43 -1.9 469,113 + HP15_463 0.43 -3.2 469,121 - HP15_463 0.43 -2.9 469,121 - HP15_463 0.43 -1.1 469,131 - HP15_463 0.44 -4.9 469,169 + HP15_463 0.45 -3.1 469,416 + HP15_463 0.56 -1.0 469,530 - HP15_463 0.61 -3.4 469,736 - HP15_463 0.70 -2.4 469,900 - HP15_463 0.77 -3.0 469,995 + HP15_463 0.81 -1.9 470,041 + HP15_463 0.83 -1.9 470,060 - HP15_463 0.84 -3.5 470,096 + HP15_463 0.86 -3.0 470,311 + -3.0 470,365 + -0.5 470,373 - +0.3 470,433 + +0.9 470,451 - -1.1 470,451 - -1.3 470,462 + -1.1 470,504 - +0.3 470,547 - +0.3 470,547 - +0.2 470,589 + +2.3 470,620 - -1.2 470,851 - HP15_464 0.24 +2.3 471,007 + HP15_464 0.37 +1.0 471,009 + HP15_464 0.37 -0.8 471,020 - HP15_464 0.38 -1.7 471,238 - HP15_464 0.55 -3.0 471,238 - HP15_464 0.55 -1.3 471,256 + HP15_464 0.57 +0.4 471,390 + HP15_464 0.68 +2.8
Or see this region's nucleotide sequence