Strain Fitness in Marinobacter adhaerens HP15 around HP15_46

Experiment: monoculture; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_44 and HP15_45 are separated by 71 nucleotidesHP15_45 and HP15_46 are separated by 225 nucleotidesHP15_46 and HP15_47 overlap by 1 nucleotidesHP15_47 and HP15_48 overlap by 4 nucleotides HP15_44: HP15_44 - DitK protein, at 48,902 to 49,600 _44 HP15_45: HP15_45 - hypothetical protein, at 49,672 to 49,779 _45 HP15_46: HP15_46 - amidohydrolase 2, at 50,005 to 51,081 _46 HP15_47: HP15_47 - fumarylacetoacetate (FAA) hydrolase, at 51,081 to 51,947 _47 HP15_48: HP15_48 - 3-hydroxybutyryl-CoA dehydrogenase, at 51,944 to 52,849 _48 Position (kb) 50 51 52Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 49.047 kb on + strand, within HP15_44at 49.279 kb on - strand, within HP15_44at 49.342 kb on - strand, within HP15_44at 49.385 kb on - strand, within HP15_44at 49.542 kb on + strandat 49.569 kb on - strandat 49.763 kb on - strand, within HP15_45at 49.864 kb on + strandat 50.133 kb on - strand, within HP15_46at 50.133 kb on - strand, within HP15_46at 50.133 kb on - strand, within HP15_46at 50.133 kb on - strand, within HP15_46at 50.138 kb on + strand, within HP15_46at 50.157 kb on + strand, within HP15_46at 50.159 kb on - strand, within HP15_46at 50.161 kb on - strand, within HP15_46at 50.185 kb on - strand, within HP15_46at 50.255 kb on + strand, within HP15_46at 50.255 kb on + strand, within HP15_46at 50.274 kb on + strand, within HP15_46at 50.297 kb on + strand, within HP15_46at 50.304 kb on + strand, within HP15_46at 50.312 kb on - strand, within HP15_46at 50.422 kb on + strand, within HP15_46at 50.488 kb on - strand, within HP15_46at 50.588 kb on + strand, within HP15_46at 50.596 kb on - strand, within HP15_46at 50.617 kb on - strand, within HP15_46at 50.619 kb on + strand, within HP15_46at 50.627 kb on - strand, within HP15_46at 50.632 kb on - strand, within HP15_46at 50.726 kb on + strand, within HP15_46at 50.741 kb on - strand, within HP15_46at 50.785 kb on + strand, within HP15_46at 50.790 kb on + strand, within HP15_46at 50.793 kb on - strand, within HP15_46at 50.793 kb on - strand, within HP15_46at 50.798 kb on - strand, within HP15_46at 50.878 kb on + strand, within HP15_46at 50.886 kb on - strand, within HP15_46at 50.915 kb on - strand, within HP15_46at 51.042 kb on - strandat 51.069 kb on + strandat 51.069 kb on + strandat 51.069 kb on + strandat 51.069 kb on + strandat 51.077 kb on - strandat 51.077 kb on - strandat 51.080 kb on + strandat 51.088 kb on - strandat 51.125 kb on + strandat 51.125 kb on + strandat 51.189 kb on + strand, within HP15_47at 51.212 kb on + strand, within HP15_47at 51.225 kb on - strand, within HP15_47at 51.232 kb on + strand, within HP15_47at 51.282 kb on - strand, within HP15_47at 51.381 kb on + strand, within HP15_47at 51.419 kb on + strand, within HP15_47at 51.439 kb on - strand, within HP15_47at 51.521 kb on - strand, within HP15_47at 51.569 kb on + strand, within HP15_47at 51.633 kb on - strand, within HP15_47at 51.665 kb on + strand, within HP15_47at 51.680 kb on + strand, within HP15_47at 51.727 kb on + strand, within HP15_47at 51.761 kb on - strand, within HP15_47at 51.801 kb on + strand, within HP15_47at 51.860 kb on + strand, within HP15_47at 51.976 kb on - strandat 52.028 kb on + strandat 52.030 kb on + strandat 52.051 kb on - strand, within HP15_48at 52.056 kb on + strand, within HP15_48

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6
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49,047 + HP15_44 0.21 +0.8
49,279 - HP15_44 0.54 +0.0
49,342 - HP15_44 0.63 +1.8
49,385 - HP15_44 0.69 -3.1
49,542 + +1.1
49,569 - -1.3
49,763 - HP15_45 0.84 +0.5
49,864 + +0.9
50,133 - HP15_46 0.12 +1.6
50,133 - HP15_46 0.12 -0.4
50,133 - HP15_46 0.12 +1.5
50,133 - HP15_46 0.12 -1.5
50,138 + HP15_46 0.12 +1.3
50,157 + HP15_46 0.14 +1.8
50,159 - HP15_46 0.14 +0.5
50,161 - HP15_46 0.14 +2.0
50,185 - HP15_46 0.17 +3.1
50,255 + HP15_46 0.23 +0.9
50,255 + HP15_46 0.23 -0.4
50,274 + HP15_46 0.25 +3.2
50,297 + HP15_46 0.27 -0.5
50,304 + HP15_46 0.28 +2.3
50,312 - HP15_46 0.29 -0.5
50,422 + HP15_46 0.39 +0.6
50,488 - HP15_46 0.45 -3.0
50,588 + HP15_46 0.54 -0.5
50,596 - HP15_46 0.55 +1.0
50,617 - HP15_46 0.57 -0.5
50,619 + HP15_46 0.57 +0.2
50,627 - HP15_46 0.58 -0.6
50,632 - HP15_46 0.58 +1.5
50,726 + HP15_46 0.67 +0.9
50,741 - HP15_46 0.68 +1.0
50,785 + HP15_46 0.72 +0.8
50,790 + HP15_46 0.73 -0.9
50,793 - HP15_46 0.73 -0.4
50,793 - HP15_46 0.73 -1.2
50,798 - HP15_46 0.74 -0.4
50,878 + HP15_46 0.81 +2.5
50,886 - HP15_46 0.82 +1.5
50,915 - HP15_46 0.84 +1.1
51,042 - -0.8
51,069 + +1.5
51,069 + -0.1
51,069 + -0.8
51,069 + +0.8
51,077 - +0.9
51,077 - +2.6
51,080 + +0.1
51,088 - -1.4
51,125 + +0.0
51,125 + -0.1
51,189 + HP15_47 0.12 -1.3
51,212 + HP15_47 0.15 +0.2
51,225 - HP15_47 0.17 -1.0
51,232 + HP15_47 0.17 -0.8
51,282 - HP15_47 0.23 +1.6
51,381 + HP15_47 0.35 -0.4
51,419 + HP15_47 0.39 +1.7
51,439 - HP15_47 0.41 -0.6
51,521 - HP15_47 0.51 -0.3
51,569 + HP15_47 0.56 +0.3
51,633 - HP15_47 0.64 -1.0
51,665 + HP15_47 0.67 +1.1
51,680 + HP15_47 0.69 -1.0
51,727 + HP15_47 0.75 -0.6
51,761 - HP15_47 0.78 -0.2
51,801 + HP15_47 0.83 -2.3
51,860 + HP15_47 0.90 +2.1
51,976 - +0.3
52,028 + +1.0
52,030 + -0.6
52,051 - HP15_48 0.12 +0.2
52,056 + HP15_48 0.12 +0.8

Or see this region's nucleotide sequence