Strain Fitness in Marinobacter adhaerens HP15 around HP15_447

Experiment: monoculture; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_446 and HP15_447 overlap by 4 nucleotidesHP15_447 and HP15_448 overlap by 4 nucleotides HP15_446: HP15_446 - glycosyltransferase, at 450,221 to 451,276 _446 HP15_447: HP15_447 - glycosyltransferase, at 451,273 to 452,388 _447 HP15_448: HP15_448 - protein containing DUF1022, at 452,385 to 453,380 _448 Position (kb) 451 452 453Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 450.334 kb on + strand, within HP15_446at 450.334 kb on + strand, within HP15_446at 450.342 kb on - strand, within HP15_446at 450.352 kb on - strand, within HP15_446at 450.352 kb on - strand, within HP15_446at 450.352 kb on - strand, within HP15_446at 450.391 kb on - strand, within HP15_446at 450.443 kb on + strand, within HP15_446at 450.465 kb on - strand, within HP15_446at 450.485 kb on + strand, within HP15_446at 450.516 kb on + strand, within HP15_446at 450.542 kb on + strand, within HP15_446at 450.550 kb on - strand, within HP15_446at 450.553 kb on - strand, within HP15_446at 450.611 kb on + strand, within HP15_446at 450.701 kb on - strand, within HP15_446at 450.702 kb on + strand, within HP15_446at 450.707 kb on - strand, within HP15_446at 450.707 kb on - strand, within HP15_446at 450.763 kb on + strand, within HP15_446at 450.783 kb on - strand, within HP15_446at 450.823 kb on - strand, within HP15_446at 450.918 kb on - strand, within HP15_446at 450.937 kb on - strand, within HP15_446at 450.990 kb on + strand, within HP15_446at 451.087 kb on - strand, within HP15_446at 451.236 kb on + strandat 451.294 kb on + strandat 451.424 kb on - strand, within HP15_447at 451.558 kb on - strand, within HP15_447at 451.650 kb on - strand, within HP15_447at 451.673 kb on + strand, within HP15_447at 451.695 kb on + strand, within HP15_447at 451.710 kb on + strand, within HP15_447at 451.718 kb on - strand, within HP15_447at 451.894 kb on + strand, within HP15_447at 451.998 kb on - strand, within HP15_447at 452.020 kb on + strand, within HP15_447at 452.139 kb on - strand, within HP15_447at 452.326 kb on + strandat 452.351 kb on + strandat 453.378 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6
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450,334 + HP15_446 0.11 +2.0
450,334 + HP15_446 0.11 +1.0
450,342 - HP15_446 0.11 -0.0
450,352 - HP15_446 0.12 -0.9
450,352 - HP15_446 0.12 -0.8
450,352 - HP15_446 0.12 -2.5
450,391 - HP15_446 0.16 +0.8
450,443 + HP15_446 0.21 +0.7
450,465 - HP15_446 0.23 -1.0
450,485 + HP15_446 0.25 -0.3
450,516 + HP15_446 0.28 +1.5
450,542 + HP15_446 0.30 -1.0
450,550 - HP15_446 0.31 +0.0
450,553 - HP15_446 0.31 -0.0
450,611 + HP15_446 0.37 +0.1
450,701 - HP15_446 0.45 +1.8
450,702 + HP15_446 0.46 +1.1
450,707 - HP15_446 0.46 -1.2
450,707 - HP15_446 0.46 -0.9
450,763 + HP15_446 0.51 -3.6
450,783 - HP15_446 0.53 +3.8
450,823 - HP15_446 0.57 -0.3
450,918 - HP15_446 0.66 -1.0
450,937 - HP15_446 0.68 -1.1
450,990 + HP15_446 0.73 -0.2
451,087 - HP15_446 0.82 +0.5
451,236 + -1.0
451,294 + +0.9
451,424 - HP15_447 0.14 +1.7
451,558 - HP15_447 0.26 +2.0
451,650 - HP15_447 0.34 -2.1
451,673 + HP15_447 0.36 +2.2
451,695 + HP15_447 0.38 +0.4
451,710 + HP15_447 0.39 -0.3
451,718 - HP15_447 0.40 +0.3
451,894 + HP15_447 0.56 +0.3
451,998 - HP15_447 0.65 -2.7
452,020 + HP15_447 0.67 -1.0
452,139 - HP15_447 0.78 -1.2
452,326 + +0.4
452,351 + -2.8
453,378 - +1.9

Or see this region's nucleotide sequence