Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g57

Experiment: monoculture; Experiment C, time point 6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_p187g56 and HP15_p187g57 overlap by 4 nucleotidesHP15_p187g57 and HP15_p187g58 overlap by 1 nucleotides HP15_p187g56: HP15_p187g56 - polysaccharide pyruvyl transferase-like protein, at 49,002 to 50,126 _p187g56 HP15_p187g57: HP15_p187g57 - protein containing glycosyl transferase group 1 domain, at 50,123 to 51,394 _p187g57 HP15_p187g58: HP15_p187g58 - protein containing glycosyl transferase group 1 domain, at 51,394 to 52,509 _p187g58 Position (kb) 50 51 52Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 49.140 kb on - strand, within HP15_p187g56at 49.140 kb on - strand, within HP15_p187g56at 49.140 kb on - strand, within HP15_p187g56at 49.141 kb on + strand, within HP15_p187g56at 49.150 kb on - strand, within HP15_p187g56at 49.150 kb on - strand, within HP15_p187g56at 49.288 kb on - strand, within HP15_p187g56at 49.383 kb on + strand, within HP15_p187g56at 49.388 kb on + strand, within HP15_p187g56at 49.398 kb on - strand, within HP15_p187g56at 49.398 kb on - strand, within HP15_p187g56at 49.445 kb on - strand, within HP15_p187g56at 49.445 kb on - strand, within HP15_p187g56at 49.465 kb on + strand, within HP15_p187g56at 49.465 kb on + strand, within HP15_p187g56at 49.465 kb on + strand, within HP15_p187g56at 49.465 kb on + strand, within HP15_p187g56at 49.465 kb on - strand, within HP15_p187g56at 49.473 kb on - strand, within HP15_p187g56at 49.473 kb on - strand, within HP15_p187g56at 49.473 kb on - strand, within HP15_p187g56at 49.473 kb on - strand, within HP15_p187g56at 49.537 kb on + strand, within HP15_p187g56at 49.537 kb on + strand, within HP15_p187g56at 49.545 kb on - strand, within HP15_p187g56at 49.545 kb on - strand, within HP15_p187g56at 49.570 kb on + strand, within HP15_p187g56at 49.622 kb on + strand, within HP15_p187g56at 49.630 kb on - strand, within HP15_p187g56at 49.630 kb on - strand, within HP15_p187g56at 49.640 kb on + strand, within HP15_p187g56at 49.645 kb on + strand, within HP15_p187g56at 49.679 kb on - strand, within HP15_p187g56at 49.685 kb on - strand, within HP15_p187g56at 49.708 kb on - strand, within HP15_p187g56at 49.710 kb on + strand, within HP15_p187g56at 49.790 kb on + strand, within HP15_p187g56at 49.831 kb on - strand, within HP15_p187g56at 49.942 kb on - strand, within HP15_p187g56at 49.958 kb on + strand, within HP15_p187g56at 49.958 kb on + strand, within HP15_p187g56at 49.961 kb on - strand, within HP15_p187g56at 49.962 kb on - strand, within HP15_p187g56at 49.966 kb on - strand, within HP15_p187g56at 49.966 kb on - strand, within HP15_p187g56at 50.085 kb on - strandat 50.105 kb on + strandat 50.105 kb on + strandat 50.105 kb on + strandat 50.105 kb on + strandat 50.113 kb on - strandat 50.148 kb on + strandat 50.150 kb on - strandat 50.252 kb on + strand, within HP15_p187g57at 50.252 kb on + strand, within HP15_p187g57at 50.252 kb on + strand, within HP15_p187g57at 50.252 kb on + strand, within HP15_p187g57at 50.252 kb on + strand, within HP15_p187g57at 50.260 kb on - strand, within HP15_p187g57at 50.260 kb on - strand, within HP15_p187g57at 50.268 kb on + strand, within HP15_p187g57at 50.465 kb on - strand, within HP15_p187g57at 50.476 kb on + strand, within HP15_p187g57at 50.476 kb on + strand, within HP15_p187g57at 50.579 kb on - strand, within HP15_p187g57at 50.580 kb on - strand, within HP15_p187g57at 50.706 kb on + strand, within HP15_p187g57at 50.714 kb on - strand, within HP15_p187g57at 50.714 kb on - strand, within HP15_p187g57at 50.793 kb on + strand, within HP15_p187g57at 50.793 kb on + strand, within HP15_p187g57at 50.793 kb on + strand, within HP15_p187g57at 50.793 kb on + strand, within HP15_p187g57at 50.799 kb on - strand, within HP15_p187g57at 50.799 kb on - strand, within HP15_p187g57at 50.800 kb on - strand, within HP15_p187g57at 50.801 kb on - strand, within HP15_p187g57at 50.832 kb on + strand, within HP15_p187g57at 50.834 kb on + strand, within HP15_p187g57at 50.848 kb on - strand, within HP15_p187g57at 50.907 kb on + strand, within HP15_p187g57at 50.921 kb on - strand, within HP15_p187g57at 50.988 kb on + strand, within HP15_p187g57at 50.996 kb on - strand, within HP15_p187g57at 50.996 kb on - strand, within HP15_p187g57at 50.996 kb on - strand, within HP15_p187g57at 50.998 kb on + strand, within HP15_p187g57at 51.031 kb on - strand, within HP15_p187g57at 51.031 kb on - strand, within HP15_p187g57at 51.032 kb on + strand, within HP15_p187g57at 51.032 kb on + strand, within HP15_p187g57at 51.040 kb on - strand, within HP15_p187g57at 51.040 kb on - strand, within HP15_p187g57at 51.040 kb on - strand, within HP15_p187g57at 51.040 kb on - strand, within HP15_p187g57at 51.040 kb on - strand, within HP15_p187g57at 51.040 kb on - strand, within HP15_p187g57at 51.070 kb on - strand, within HP15_p187g57at 51.144 kb on - strand, within HP15_p187g57at 51.145 kb on + strand, within HP15_p187g57at 51.160 kb on + strand, within HP15_p187g57at 51.225 kb on + strand, within HP15_p187g57at 51.286 kb on - strandat 51.301 kb on - strandat 51.323 kb on + strandat 51.338 kb on + strandat 51.352 kb on + strandat 51.394 kb on - strandat 51.398 kb on + strandat 51.398 kb on + strandat 51.398 kb on + strandat 51.406 kb on - strandat 51.408 kb on + strandat 51.408 kb on + strandat 51.416 kb on - strandat 51.429 kb on + strandat 51.447 kb on - strandat 51.449 kb on + strandat 51.518 kb on - strand, within HP15_p187g58at 51.582 kb on - strand, within HP15_p187g58at 51.682 kb on + strand, within HP15_p187g58at 51.754 kb on + strand, within HP15_p187g58at 51.765 kb on + strand, within HP15_p187g58at 51.765 kb on + strand, within HP15_p187g58at 51.765 kb on + strand, within HP15_p187g58at 51.773 kb on - strand, within HP15_p187g58at 51.804 kb on + strand, within HP15_p187g58at 51.804 kb on + strand, within HP15_p187g58at 51.804 kb on + strand, within HP15_p187g58at 51.805 kb on - strand, within HP15_p187g58at 51.812 kb on - strand, within HP15_p187g58at 51.812 kb on - strand, within HP15_p187g58at 51.812 kb on - strand, within HP15_p187g58at 51.823 kb on + strand, within HP15_p187g58at 51.882 kb on - strand, within HP15_p187g58at 51.893 kb on + strand, within HP15_p187g58at 52.007 kb on + strand, within HP15_p187g58at 52.009 kb on - strand, within HP15_p187g58at 52.035 kb on + strand, within HP15_p187g58at 52.046 kb on + strand, within HP15_p187g58at 52.058 kb on - strand, within HP15_p187g58at 52.086 kb on - strand, within HP15_p187g58at 52.087 kb on - strand, within HP15_p187g58at 52.144 kb on - strand, within HP15_p187g58at 52.144 kb on - strand, within HP15_p187g58at 52.146 kb on + strand, within HP15_p187g58at 52.183 kb on - strand, within HP15_p187g58at 52.222 kb on - strand, within HP15_p187g58at 52.244 kb on + strand, within HP15_p187g58at 52.268 kb on + strand, within HP15_p187g58at 52.268 kb on + strand, within HP15_p187g58at 52.380 kb on + strand, within HP15_p187g58at 52.392 kb on + strand, within HP15_p187g58

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6
remove
49,140 - HP15_p187g56 0.12 -0.1
49,140 - HP15_p187g56 0.12 -0.0
49,140 - HP15_p187g56 0.12 -0.0
49,141 + HP15_p187g56 0.12 +1.3
49,150 - HP15_p187g56 0.13 +2.2
49,150 - HP15_p187g56 0.13 -0.0
49,288 - HP15_p187g56 0.25 -1.0
49,383 + HP15_p187g56 0.34 -1.7
49,388 + HP15_p187g56 0.34 +0.2
49,398 - HP15_p187g56 0.35 +1.5
49,398 - HP15_p187g56 0.35 +1.6
49,445 - HP15_p187g56 0.39 -2.5
49,445 - HP15_p187g56 0.39 -3.8
49,465 + HP15_p187g56 0.41 +0.6
49,465 + HP15_p187g56 0.41 +1.9
49,465 + HP15_p187g56 0.41 +0.6
49,465 + HP15_p187g56 0.41 +0.6
49,465 - HP15_p187g56 0.41 -0.4
49,473 - HP15_p187g56 0.42 +1.3
49,473 - HP15_p187g56 0.42 -1.7
49,473 - HP15_p187g56 0.42 -0.3
49,473 - HP15_p187g56 0.42 -0.0
49,537 + HP15_p187g56 0.48 +2.0
49,537 + HP15_p187g56 0.48 +0.3
49,545 - HP15_p187g56 0.48 +2.2
49,545 - HP15_p187g56 0.48 -0.5
49,570 + HP15_p187g56 0.50 -0.9
49,622 + HP15_p187g56 0.55 +0.8
49,630 - HP15_p187g56 0.56 -1.6
49,630 - HP15_p187g56 0.56 -1.4
49,640 + HP15_p187g56 0.57 +1.6
49,645 + HP15_p187g56 0.57 -1.6
49,679 - HP15_p187g56 0.60 +1.2
49,685 - HP15_p187g56 0.61 -0.7
49,708 - HP15_p187g56 0.63 -0.9
49,710 + HP15_p187g56 0.63 -1.1
49,790 + HP15_p187g56 0.70 +1.4
49,831 - HP15_p187g56 0.74 +1.0
49,942 - HP15_p187g56 0.84 +0.7
49,958 + HP15_p187g56 0.85 -0.5
49,958 + HP15_p187g56 0.85 -1.8
49,961 - HP15_p187g56 0.85 -0.1
49,962 - HP15_p187g56 0.85 +2.1
49,966 - HP15_p187g56 0.86 -0.8
49,966 - HP15_p187g56 0.86 -3.1
50,085 - -0.1
50,105 + -0.1
50,105 + +1.5
50,105 + +0.5
50,105 + +1.5
50,113 - -0.3
50,148 + +1.4
50,150 - -1.2
50,252 + HP15_p187g57 0.10 -0.3
50,252 + HP15_p187g57 0.10 -0.6
50,252 + HP15_p187g57 0.10 -1.2
50,252 + HP15_p187g57 0.10 -0.8
50,252 + HP15_p187g57 0.10 -1.1
50,260 - HP15_p187g57 0.11 -1.6
50,260 - HP15_p187g57 0.11 -0.2
50,268 + HP15_p187g57 0.11 +1.4
50,465 - HP15_p187g57 0.27 -1.4
50,476 + HP15_p187g57 0.28 +1.2
50,476 + HP15_p187g57 0.28 -0.3
50,579 - HP15_p187g57 0.36 -1.2
50,580 - HP15_p187g57 0.36 -2.4
50,706 + HP15_p187g57 0.46 -1.8
50,714 - HP15_p187g57 0.46 +1.3
50,714 - HP15_p187g57 0.46 +2.0
50,793 + HP15_p187g57 0.53 -0.5
50,793 + HP15_p187g57 0.53 -2.2
50,793 + HP15_p187g57 0.53 -0.3
50,793 + HP15_p187g57 0.53 -2.2
50,799 - HP15_p187g57 0.53 +1.8
50,799 - HP15_p187g57 0.53 -0.0
50,800 - HP15_p187g57 0.53 -1.4
50,801 - HP15_p187g57 0.53 -1.4
50,832 + HP15_p187g57 0.56 +0.6
50,834 + HP15_p187g57 0.56 -1.2
50,848 - HP15_p187g57 0.57 -0.1
50,907 + HP15_p187g57 0.62 +0.6
50,921 - HP15_p187g57 0.63 -1.5
50,988 + HP15_p187g57 0.68 -2.1
50,996 - HP15_p187g57 0.69 -2.7
50,996 - HP15_p187g57 0.69 +0.3
50,996 - HP15_p187g57 0.69 +1.8
50,998 + HP15_p187g57 0.69 +1.5
51,031 - HP15_p187g57 0.71 -1.9
51,031 - HP15_p187g57 0.71 +0.8
51,032 + HP15_p187g57 0.71 -2.2
51,032 + HP15_p187g57 0.71 -2.5
51,040 - HP15_p187g57 0.72 -1.5
51,040 - HP15_p187g57 0.72 -0.5
51,040 - HP15_p187g57 0.72 +1.6
51,040 - HP15_p187g57 0.72 -2.3
51,040 - HP15_p187g57 0.72 -0.9
51,040 - HP15_p187g57 0.72 +0.7
51,070 - HP15_p187g57 0.74 +1.2
51,144 - HP15_p187g57 0.80 -0.9
51,145 + HP15_p187g57 0.80 -1.6
51,160 + HP15_p187g57 0.82 -3.3
51,225 + HP15_p187g57 0.87 -1.8
51,286 - -1.9
51,301 - -0.6
51,323 + -1.1
51,338 + -0.3
51,352 + +2.6
51,394 - -1.2
51,398 + +1.3
51,398 + -2.2
51,398 + +0.2
51,406 - -1.8
51,408 + +0.7
51,408 + +1.3
51,416 - -0.7
51,429 + -1.4
51,447 - +1.0
51,449 + -0.8
51,518 - HP15_p187g58 0.11 +0.4
51,582 - HP15_p187g58 0.17 +1.1
51,682 + HP15_p187g58 0.26 +0.5
51,754 + HP15_p187g58 0.32 +1.9
51,765 + HP15_p187g58 0.33 -1.8
51,765 + HP15_p187g58 0.33 +1.4
51,765 + HP15_p187g58 0.33 -0.4
51,773 - HP15_p187g58 0.34 +1.5
51,804 + HP15_p187g58 0.37 -2.0
51,804 + HP15_p187g58 0.37 -0.8
51,804 + HP15_p187g58 0.37 -0.9
51,805 - HP15_p187g58 0.37 -2.6
51,812 - HP15_p187g58 0.37 -1.1
51,812 - HP15_p187g58 0.37 +1.8
51,812 - HP15_p187g58 0.37 +2.2
51,823 + HP15_p187g58 0.38 +1.9
51,882 - HP15_p187g58 0.44 -0.9
51,893 + HP15_p187g58 0.45 +0.8
52,007 + HP15_p187g58 0.55 +0.5
52,009 - HP15_p187g58 0.55 +0.1
52,035 + HP15_p187g58 0.57 -0.6
52,046 + HP15_p187g58 0.58 -0.0
52,058 - HP15_p187g58 0.59 +0.5
52,086 - HP15_p187g58 0.62 -0.0
52,087 - HP15_p187g58 0.62 +1.2
52,144 - HP15_p187g58 0.67 +0.1
52,144 - HP15_p187g58 0.67 -0.4
52,146 + HP15_p187g58 0.67 -0.7
52,183 - HP15_p187g58 0.71 -1.8
52,222 - HP15_p187g58 0.74 +2.5
52,244 + HP15_p187g58 0.76 +0.6
52,268 + HP15_p187g58 0.78 -1.6
52,268 + HP15_p187g58 0.78 -1.5
52,380 + HP15_p187g58 0.88 +2.2
52,392 + HP15_p187g58 0.89 +1.9

Or see this region's nucleotide sequence