Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g47 and HP15_p187g48 are separated by 185 nucleotides HP15_p187g48 and HP15_p187g49 are separated by 48 nucleotides HP15_p187g49 and HP15_p187g50 are separated by 0 nucleotides
HP15_p187g47: HP15_p187g47 - dTDP-glucose 4,6-dehydratase, at 41,132 to 42,205
_p187g47
HP15_p187g48: HP15_p187g48 - hypothetical protein, at 42,391 to 42,711
_p187g48
HP15_p187g49: HP15_p187g49 - dTDP-4-dehydrorhamnose reductase, at 42,760 to 43,134
_p187g49
HP15_p187g50: HP15_p187g50 - glucose-1-phosphate thymidylyltransferase 1, at 43,135 to 44,019
_p187g50
Position (kb) 42
43 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 41.392 kb on - strand, within HP15_p187g47 at 41.405 kb on - strand, within HP15_p187g47 at 41.440 kb on + strand, within HP15_p187g47 at 41.442 kb on + strand, within HP15_p187g47 at 41.442 kb on + strand, within HP15_p187g47 at 41.448 kb on - strand, within HP15_p187g47 at 41.448 kb on - strand, within HP15_p187g47 at 41.450 kb on - strand, within HP15_p187g47 at 41.450 kb on - strand, within HP15_p187g47 at 41.450 kb on - strand, within HP15_p187g47 at 41.460 kb on - strand, within HP15_p187g47 at 41.473 kb on - strand, within HP15_p187g47 at 41.536 kb on + strand, within HP15_p187g47 at 41.536 kb on + strand, within HP15_p187g47 at 41.536 kb on + strand, within HP15_p187g47 at 41.539 kb on - strand, within HP15_p187g47 at 41.544 kb on - strand, within HP15_p187g47 at 41.545 kb on - strand, within HP15_p187g47 at 41.577 kb on + strand, within HP15_p187g47 at 41.579 kb on + strand, within HP15_p187g47 at 41.593 kb on - strand, within HP15_p187g47 at 41.612 kb on + strand, within HP15_p187g47 at 41.620 kb on - strand, within HP15_p187g47 at 41.641 kb on + strand, within HP15_p187g47 at 41.654 kb on - strand, within HP15_p187g47 at 41.668 kb on - strand, within HP15_p187g47 at 41.687 kb on - strand, within HP15_p187g47 at 41.693 kb on + strand, within HP15_p187g47 at 41.827 kb on + strand, within HP15_p187g47 at 41.827 kb on + strand, within HP15_p187g47 at 41.827 kb on + strand, within HP15_p187g47 at 41.829 kb on - strand, within HP15_p187g47 at 41.835 kb on - strand, within HP15_p187g47 at 41.840 kb on - strand, within HP15_p187g47 at 41.842 kb on - strand, within HP15_p187g47 at 41.853 kb on - strand, within HP15_p187g47 at 41.865 kb on - strand, within HP15_p187g47 at 41.899 kb on - strand, within HP15_p187g47 at 41.900 kb on - strand, within HP15_p187g47 at 41.921 kb on - strand, within HP15_p187g47 at 42.028 kb on + strand, within HP15_p187g47 at 42.028 kb on + strand, within HP15_p187g47 at 42.034 kb on + strand, within HP15_p187g47 at 42.116 kb on + strand at 42.124 kb on - strand at 42.127 kb on - strand at 42.133 kb on + strand at 42.141 kb on - strand at 42.195 kb on - strand at 42.276 kb on - strand at 42.301 kb on - strand at 42.323 kb on + strand at 42.357 kb on - strand at 42.365 kb on - strand at 42.372 kb on + strand at 42.385 kb on - strand at 42.390 kb on - strand at 42.401 kb on - strand at 42.419 kb on + strand at 42.425 kb on + strand, within HP15_p187g48 at 42.429 kb on + strand, within HP15_p187g48 at 42.469 kb on + strand, within HP15_p187g48 at 42.469 kb on + strand, within HP15_p187g48 at 42.477 kb on - strand, within HP15_p187g48 at 42.477 kb on - strand, within HP15_p187g48 at 42.477 kb on - strand, within HP15_p187g48 at 42.477 kb on - strand, within HP15_p187g48 at 42.530 kb on - strand, within HP15_p187g48 at 42.546 kb on - strand, within HP15_p187g48 at 42.571 kb on + strand, within HP15_p187g48 at 42.579 kb on - strand, within HP15_p187g48 at 42.608 kb on + strand, within HP15_p187g48 at 42.608 kb on + strand, within HP15_p187g48 at 42.701 kb on + strand at 42.709 kb on - strand at 42.709 kb on - strand at 42.776 kb on + strand at 42.784 kb on - strand at 42.827 kb on - strand, within HP15_p187g49 at 42.876 kb on - strand, within HP15_p187g49 at 42.896 kb on + strand, within HP15_p187g49 at 42.936 kb on - strand, within HP15_p187g49 at 42.988 kb on + strand, within HP15_p187g49 at 43.004 kb on + strand, within HP15_p187g49 at 43.053 kb on + strand, within HP15_p187g49 at 43.053 kb on + strand, within HP15_p187g49 at 43.061 kb on - strand, within HP15_p187g49 at 43.071 kb on + strand, within HP15_p187g49 at 43.117 kb on - strand at 43.142 kb on + strand at 43.142 kb on + strand at 43.150 kb on - strand at 43.173 kb on + strand at 43.196 kb on + strand at 43.204 kb on - strand at 43.386 kb on - strand, within HP15_p187g50 at 43.393 kb on + strand, within HP15_p187g50 at 43.396 kb on - strand, within HP15_p187g50 at 43.401 kb on - strand, within HP15_p187g50 at 43.401 kb on - strand, within HP15_p187g50 at 43.436 kb on + strand, within HP15_p187g50 at 43.436 kb on + strand, within HP15_p187g50 at 43.436 kb on + strand, within HP15_p187g50 at 43.442 kb on + strand, within HP15_p187g50 at 43.442 kb on + strand, within HP15_p187g50 at 43.444 kb on - strand, within HP15_p187g50 at 43.450 kb on - strand, within HP15_p187g50 at 43.450 kb on - strand, within HP15_p187g50 at 43.461 kb on + strand, within HP15_p187g50 at 43.472 kb on + strand, within HP15_p187g50 at 43.480 kb on - strand, within HP15_p187g50 at 43.543 kb on - strand, within HP15_p187g50 at 43.568 kb on - strand, within HP15_p187g50 at 43.601 kb on + strand, within HP15_p187g50 at 43.649 kb on + strand, within HP15_p187g50
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 41,392 - HP15_p187g47 0.24 -0.7 41,405 - HP15_p187g47 0.25 -1.0 41,440 + HP15_p187g47 0.29 -0.3 41,442 + HP15_p187g47 0.29 -0.9 41,442 + HP15_p187g47 0.29 +1.6 41,448 - HP15_p187g47 0.29 -0.9 41,448 - HP15_p187g47 0.29 -1.7 41,450 - HP15_p187g47 0.30 +0.5 41,450 - HP15_p187g47 0.30 +0.7 41,450 - HP15_p187g47 0.30 +1.1 41,460 - HP15_p187g47 0.31 +2.0 41,473 - HP15_p187g47 0.32 +0.5 41,536 + HP15_p187g47 0.38 -2.1 41,536 + HP15_p187g47 0.38 +1.4 41,536 + HP15_p187g47 0.38 -0.9 41,539 - HP15_p187g47 0.38 +1.8 41,544 - HP15_p187g47 0.38 -0.8 41,545 - HP15_p187g47 0.38 -2.8 41,577 + HP15_p187g47 0.41 -1.9 41,579 + HP15_p187g47 0.42 -4.1 41,593 - HP15_p187g47 0.43 -2.3 41,612 + HP15_p187g47 0.45 -0.5 41,620 - HP15_p187g47 0.45 +0.3 41,641 + HP15_p187g47 0.47 -1.5 41,654 - HP15_p187g47 0.49 -0.2 41,668 - HP15_p187g47 0.50 +2.1 41,687 - HP15_p187g47 0.52 -1.0 41,693 + HP15_p187g47 0.52 +0.4 41,827 + HP15_p187g47 0.65 +0.2 41,827 + HP15_p187g47 0.65 +1.9 41,827 + HP15_p187g47 0.65 +2.1 41,829 - HP15_p187g47 0.65 +2.8 41,835 - HP15_p187g47 0.65 -0.3 41,840 - HP15_p187g47 0.66 -0.8 41,842 - HP15_p187g47 0.66 +2.2 41,853 - HP15_p187g47 0.67 +0.8 41,865 - HP15_p187g47 0.68 -0.3 41,899 - HP15_p187g47 0.71 +0.8 41,900 - HP15_p187g47 0.72 -0.9 41,921 - HP15_p187g47 0.73 -1.5 42,028 + HP15_p187g47 0.83 +1.8 42,028 + HP15_p187g47 0.83 -3.1 42,034 + HP15_p187g47 0.84 -1.8 42,116 + -0.7 42,124 - +1.1 42,127 - -0.4 42,133 + -0.5 42,141 - -0.2 42,195 - +0.7 42,276 - -1.3 42,301 - -0.4 42,323 + +1.6 42,357 - -0.8 42,365 - -0.2 42,372 + +1.3 42,385 - +1.2 42,390 - +2.5 42,401 - +0.2 42,419 + -1.2 42,425 + HP15_p187g48 0.11 -1.6 42,429 + HP15_p187g48 0.12 -0.9 42,469 + HP15_p187g48 0.24 -3.0 42,469 + HP15_p187g48 0.24 -1.8 42,477 - HP15_p187g48 0.27 -0.3 42,477 - HP15_p187g48 0.27 +1.3 42,477 - HP15_p187g48 0.27 +0.1 42,477 - HP15_p187g48 0.27 -0.7 42,530 - HP15_p187g48 0.43 -0.6 42,546 - HP15_p187g48 0.48 +0.3 42,571 + HP15_p187g48 0.56 +0.5 42,579 - HP15_p187g48 0.59 -0.4 42,608 + HP15_p187g48 0.68 -1.8 42,608 + HP15_p187g48 0.68 +1.7 42,701 + -0.5 42,709 - +1.1 42,709 - -1.3 42,776 + +2.8 42,784 - +1.8 42,827 - HP15_p187g49 0.18 -0.5 42,876 - HP15_p187g49 0.31 +1.2 42,896 + HP15_p187g49 0.36 -2.4 42,936 - HP15_p187g49 0.47 -0.8 42,988 + HP15_p187g49 0.61 -1.6 43,004 + HP15_p187g49 0.65 +1.8 43,053 + HP15_p187g49 0.78 -0.4 43,053 + HP15_p187g49 0.78 -0.8 43,061 - HP15_p187g49 0.80 -1.2 43,071 + HP15_p187g49 0.83 +1.0 43,117 - +2.1 43,142 + +1.8 43,142 + +1.3 43,150 - +1.2 43,173 + -0.2 43,196 + -1.8 43,204 - -0.4 43,386 - HP15_p187g50 0.28 -1.0 43,393 + HP15_p187g50 0.29 +1.2 43,396 - HP15_p187g50 0.29 -1.2 43,401 - HP15_p187g50 0.30 +0.4 43,401 - HP15_p187g50 0.30 +2.5 43,436 + HP15_p187g50 0.34 +1.0 43,436 + HP15_p187g50 0.34 -2.4 43,436 + HP15_p187g50 0.34 -0.5 43,442 + HP15_p187g50 0.35 +0.3 43,442 + HP15_p187g50 0.35 -0.5 43,444 - HP15_p187g50 0.35 +0.0 43,450 - HP15_p187g50 0.36 -0.8 43,450 - HP15_p187g50 0.36 +1.0 43,461 + HP15_p187g50 0.37 -3.1 43,472 + HP15_p187g50 0.38 +1.6 43,480 - HP15_p187g50 0.39 -0.7 43,543 - HP15_p187g50 0.46 -0.8 43,568 - HP15_p187g50 0.49 +1.0 43,601 + HP15_p187g50 0.53 -1.2 43,649 + HP15_p187g50 0.58 -0.8
Or see this region's nucleotide sequence