Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g19 and HP15_p187g20 are separated by 148 nucleotides HP15_p187g20 and HP15_p187g21 are separated by 894 nucleotides
HP15_p187g19: HP15_p187g19 - deoxyribodipyrimidine photolyase, at 16,671 to 18,188
_p187g19
HP15_p187g20: HP15_p187g20 - hypothetical protein, at 18,337 to 18,453
_p187g20
HP15_p187g21: HP15_p187g21 - hypothetical protein, at 19,348 to 19,467
_p187g21
Position (kb) 18
19 Strain fitness (log2 ratio) -2
-1
0
1
2 at 17.340 kb on + strand, within HP15_p187g19 at 17.369 kb on - strand, within HP15_p187g19 at 17.417 kb on + strand, within HP15_p187g19 at 17.463 kb on - strand, within HP15_p187g19 at 17.510 kb on + strand, within HP15_p187g19 at 17.523 kb on - strand, within HP15_p187g19 at 17.554 kb on - strand, within HP15_p187g19 at 17.630 kb on + strand, within HP15_p187g19 at 17.630 kb on + strand, within HP15_p187g19 at 17.630 kb on + strand, within HP15_p187g19 at 17.638 kb on - strand, within HP15_p187g19 at 17.689 kb on + strand, within HP15_p187g19 at 17.720 kb on + strand, within HP15_p187g19 at 17.728 kb on - strand, within HP15_p187g19 at 17.731 kb on + strand, within HP15_p187g19 at 17.735 kb on + strand, within HP15_p187g19 at 17.844 kb on - strand, within HP15_p187g19 at 17.883 kb on - strand, within HP15_p187g19 at 17.893 kb on - strand, within HP15_p187g19 at 17.893 kb on - strand, within HP15_p187g19 at 17.900 kb on - strand, within HP15_p187g19 at 17.956 kb on + strand, within HP15_p187g19 at 17.961 kb on + strand, within HP15_p187g19 at 17.962 kb on - strand, within HP15_p187g19 at 17.963 kb on + strand, within HP15_p187g19 at 17.967 kb on - strand, within HP15_p187g19 at 17.969 kb on - strand, within HP15_p187g19 at 18.023 kb on - strand, within HP15_p187g19 at 18.035 kb on + strand, within HP15_p187g19 at 18.061 kb on - strand at 18.076 kb on - strand at 18.091 kb on - strand at 18.096 kb on + strand at 18.106 kb on + strand at 18.116 kb on + strand at 18.116 kb on - strand at 18.123 kb on + strand at 18.131 kb on - strand at 18.137 kb on - strand at 18.183 kb on + strand at 18.183 kb on + strand at 18.183 kb on + strand at 18.183 kb on + strand at 18.191 kb on - strand at 18.191 kb on - strand at 18.241 kb on + strand at 18.246 kb on + strand at 18.254 kb on - strand at 18.281 kb on - strand at 18.379 kb on + strand, within HP15_p187g20 at 18.393 kb on - strand, within HP15_p187g20 at 18.393 kb on - strand, within HP15_p187g20 at 18.415 kb on - strand, within HP15_p187g20 at 18.508 kb on - strand at 18.677 kb on + strand at 18.685 kb on - strand at 18.701 kb on - strand at 18.706 kb on - strand at 18.711 kb on + strand at 18.717 kb on + strand at 18.741 kb on + strand at 18.906 kb on + strand at 18.913 kb on - strand at 18.973 kb on + strand at 19.006 kb on + strand at 19.006 kb on + strand at 19.024 kb on - strand at 19.044 kb on - strand at 19.055 kb on + strand at 19.060 kb on + strand at 19.060 kb on + strand at 19.060 kb on + strand at 19.060 kb on + strand at 19.065 kb on + strand at 19.065 kb on + strand at 19.073 kb on - strand at 19.084 kb on - strand at 19.090 kb on + strand at 19.097 kb on - strand at 19.100 kb on + strand at 19.112 kb on + strand at 19.121 kb on - strand at 19.131 kb on - strand at 19.131 kb on - strand at 19.176 kb on - strand at 19.180 kb on + strand at 19.188 kb on - strand at 19.207 kb on + strand at 19.215 kb on - strand at 19.215 kb on - strand at 19.239 kb on - strand at 19.288 kb on + strand at 19.302 kb on - strand at 19.316 kb on - strand at 19.338 kb on + strand at 19.346 kb on - strand at 19.346 kb on - strand at 19.346 kb on - strand at 19.352 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 17,340 + HP15_p187g19 0.44 -1.4 17,369 - HP15_p187g19 0.46 +1.5 17,417 + HP15_p187g19 0.49 -2.1 17,463 - HP15_p187g19 0.52 +1.2 17,510 + HP15_p187g19 0.55 -1.0 17,523 - HP15_p187g19 0.56 -1.8 17,554 - HP15_p187g19 0.58 -1.2 17,630 + HP15_p187g19 0.63 -1.1 17,630 + HP15_p187g19 0.63 -1.2 17,630 + HP15_p187g19 0.63 -0.8 17,638 - HP15_p187g19 0.64 -0.7 17,689 + HP15_p187g19 0.67 +1.7 17,720 + HP15_p187g19 0.69 +1.2 17,728 - HP15_p187g19 0.70 +0.1 17,731 + HP15_p187g19 0.70 +1.9 17,735 + HP15_p187g19 0.70 -0.4 17,844 - HP15_p187g19 0.77 -1.4 17,883 - HP15_p187g19 0.80 +1.3 17,893 - HP15_p187g19 0.81 -0.0 17,893 - HP15_p187g19 0.81 +0.9 17,900 - HP15_p187g19 0.81 -2.5 17,956 + HP15_p187g19 0.85 +0.4 17,961 + HP15_p187g19 0.85 -0.2 17,962 - HP15_p187g19 0.85 -0.1 17,963 + HP15_p187g19 0.85 +2.0 17,967 - HP15_p187g19 0.85 +1.5 17,969 - HP15_p187g19 0.86 -1.4 18,023 - HP15_p187g19 0.89 -0.8 18,035 + HP15_p187g19 0.90 +0.2 18,061 - +0.8 18,076 - +0.8 18,091 - +0.5 18,096 + +0.1 18,106 + -0.9 18,116 + -0.1 18,116 - -1.0 18,123 + -1.5 18,131 - +0.5 18,137 - -0.4 18,183 + +1.4 18,183 + +1.7 18,183 + +1.4 18,183 + -1.2 18,191 - -1.3 18,191 - -0.7 18,241 + +1.2 18,246 + -0.5 18,254 - -0.2 18,281 - +0.8 18,379 + HP15_p187g20 0.36 +2.0 18,393 - HP15_p187g20 0.48 +1.8 18,393 - HP15_p187g20 0.48 +1.1 18,415 - HP15_p187g20 0.67 -0.9 18,508 - +0.8 18,677 + +0.2 18,685 - -2.7 18,701 - -0.9 18,706 - -0.2 18,711 + +1.2 18,717 + -0.5 18,741 + -2.2 18,906 + -1.6 18,913 - +1.2 18,973 + +0.1 19,006 + +1.3 19,006 + +1.7 19,024 - -0.1 19,044 - -0.2 19,055 + -0.2 19,060 + +1.6 19,060 + +0.8 19,060 + -0.4 19,060 + +2.2 19,065 + +2.0 19,065 + -1.2 19,073 - -0.1 19,084 - +0.5 19,090 + -0.0 19,097 - +0.0 19,100 + -2.5 19,112 + -0.8 19,121 - +1.0 19,131 - -1.4 19,131 - -1.8 19,176 - +1.6 19,180 + -1.4 19,188 - +1.2 19,207 + +0.7 19,215 - -0.8 19,215 - -0.7 19,239 - +0.0 19,288 + +2.0 19,302 - -0.6 19,316 - -1.6 19,338 + -0.5 19,346 - +0.5 19,346 - +1.8 19,346 - +1.2 19,352 + -0.1
Or see this region's nucleotide sequence