Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p42g49 and HP15_p42g50 overlap by 4 nucleotides HP15_p42g50 and HP15_p42g51 are separated by 188 nucleotides HP15_p42g51 and HP15_p42g52 are separated by 25 nucleotides
HP15_p42g49: HP15_p42g49 - type IV secretion/conjugal transfer ATPase, VirB4 family, at 38,068 to 40,608
_p42g49
HP15_p42g50: HP15_p42g50 - conjugal transfer protein TrbD-like protein, at 40,605 to 40,730
_p42g50
HP15_p42g51: HP15_p42g51 - prepilin, at 40,919 to 41,344
_p42g51
HP15_p42g52: HP15_p42g52 - type II secretion system protein E, at 41,370 to 42,329
_p42g52
Position (kb) 40
41 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 39.669 kb on - strand, within HP15_p42g49 at 39.703 kb on + strand, within HP15_p42g49 at 39.704 kb on + strand, within HP15_p42g49 at 39.739 kb on - strand, within HP15_p42g49 at 39.752 kb on + strand, within HP15_p42g49 at 39.759 kb on - strand, within HP15_p42g49 at 39.801 kb on + strand, within HP15_p42g49 at 39.809 kb on - strand, within HP15_p42g49 at 39.809 kb on - strand, within HP15_p42g49 at 39.856 kb on - strand, within HP15_p42g49 at 39.865 kb on + strand, within HP15_p42g49 at 39.875 kb on + strand, within HP15_p42g49 at 39.880 kb on + strand, within HP15_p42g49 at 39.883 kb on - strand, within HP15_p42g49 at 39.941 kb on - strand, within HP15_p42g49 at 40.127 kb on + strand, within HP15_p42g49 at 40.137 kb on + strand, within HP15_p42g49 at 40.144 kb on + strand, within HP15_p42g49 at 40.149 kb on + strand, within HP15_p42g49 at 40.160 kb on + strand, within HP15_p42g49 at 40.160 kb on + strand, within HP15_p42g49 at 40.162 kb on + strand, within HP15_p42g49 at 40.162 kb on - strand, within HP15_p42g49 at 40.168 kb on - strand, within HP15_p42g49 at 40.168 kb on - strand, within HP15_p42g49 at 40.170 kb on - strand, within HP15_p42g49 at 40.178 kb on - strand, within HP15_p42g49 at 40.222 kb on + strand, within HP15_p42g49 at 40.276 kb on + strand, within HP15_p42g49 at 40.283 kb on + strand, within HP15_p42g49 at 40.316 kb on - strand, within HP15_p42g49 at 40.318 kb on + strand, within HP15_p42g49 at 40.365 kb on - strand at 40.388 kb on + strand at 40.407 kb on + strand at 40.431 kb on + strand at 40.431 kb on + strand at 40.439 kb on - strand at 40.439 kb on - strand at 40.439 kb on - strand at 40.444 kb on + strand at 40.694 kb on + strand, within HP15_p42g50 at 40.717 kb on - strand, within HP15_p42g50 at 40.717 kb on - strand, within HP15_p42g50 at 40.717 kb on - strand, within HP15_p42g50 at 40.753 kb on + strand at 40.763 kb on + strand at 40.763 kb on + strand at 40.778 kb on + strand at 40.778 kb on + strand at 40.786 kb on - strand at 40.786 kb on - strand at 40.826 kb on + strand at 40.826 kb on + strand at 40.828 kb on + strand at 40.836 kb on + strand at 40.893 kb on + strand at 40.893 kb on - strand at 40.924 kb on - strand at 40.959 kb on + strand at 40.967 kb on - strand, within HP15_p42g51 at 40.980 kb on - strand, within HP15_p42g51 at 41.021 kb on + strand, within HP15_p42g51 at 41.055 kb on + strand, within HP15_p42g51 at 41.099 kb on + strand, within HP15_p42g51 at 41.114 kb on + strand, within HP15_p42g51 at 41.163 kb on - strand, within HP15_p42g51 at 41.164 kb on + strand, within HP15_p42g51 at 41.164 kb on + strand, within HP15_p42g51 at 41.164 kb on + strand, within HP15_p42g51 at 41.164 kb on + strand, within HP15_p42g51 at 41.169 kb on + strand, within HP15_p42g51 at 41.172 kb on - strand, within HP15_p42g51 at 41.172 kb on - strand, within HP15_p42g51 at 41.215 kb on + strand, within HP15_p42g51 at 41.223 kb on - strand, within HP15_p42g51 at 41.249 kb on + strand, within HP15_p42g51 at 41.249 kb on - strand, within HP15_p42g51 at 41.259 kb on - strand, within HP15_p42g51 at 41.265 kb on + strand, within HP15_p42g51 at 41.287 kb on + strand, within HP15_p42g51 at 41.287 kb on + strand, within HP15_p42g51 at 41.287 kb on + strand, within HP15_p42g51 at 41.292 kb on + strand, within HP15_p42g51 at 41.292 kb on + strand, within HP15_p42g51 at 41.295 kb on - strand, within HP15_p42g51 at 41.295 kb on - strand, within HP15_p42g51 at 41.295 kb on - strand, within HP15_p42g51 at 41.295 kb on - strand, within HP15_p42g51 at 41.295 kb on - strand, within HP15_p42g51 at 41.295 kb on - strand, within HP15_p42g51 at 41.295 kb on - strand, within HP15_p42g51 at 41.295 kb on - strand, within HP15_p42g51 at 41.310 kb on + strand at 41.319 kb on - strand at 41.334 kb on - strand at 41.388 kb on + strand at 41.388 kb on + strand at 41.396 kb on - strand at 41.396 kb on - strand at 41.422 kb on - strand at 41.464 kb on + strand at 41.469 kb on + strand, within HP15_p42g52 at 41.547 kb on + strand, within HP15_p42g52 at 41.547 kb on + strand, within HP15_p42g52 at 41.552 kb on + strand, within HP15_p42g52 at 41.557 kb on + strand, within HP15_p42g52 at 41.625 kb on + strand, within HP15_p42g52 at 41.625 kb on + strand, within HP15_p42g52 at 41.625 kb on + strand, within HP15_p42g52 at 41.660 kb on + strand, within HP15_p42g52 at 41.660 kb on + strand, within HP15_p42g52 at 41.660 kb on + strand, within HP15_p42g52 at 41.660 kb on + strand, within HP15_p42g52 at 41.671 kb on + strand, within HP15_p42g52 at 41.714 kb on + strand, within HP15_p42g52 at 41.714 kb on + strand, within HP15_p42g52 at 41.714 kb on + strand, within HP15_p42g52 at 41.714 kb on + strand, within HP15_p42g52 at 41.714 kb on + strand, within HP15_p42g52 at 41.725 kb on + strand, within HP15_p42g52
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 39,669 - HP15_p42g49 0.63 +0.8 39,703 + HP15_p42g49 0.64 +0.5 39,704 + HP15_p42g49 0.64 +2.3 39,739 - HP15_p42g49 0.66 +0.4 39,752 + HP15_p42g49 0.66 -0.2 39,759 - HP15_p42g49 0.67 -0.4 39,801 + HP15_p42g49 0.68 +1.9 39,809 - HP15_p42g49 0.69 +1.4 39,809 - HP15_p42g49 0.69 +1.1 39,856 - HP15_p42g49 0.70 +1.0 39,865 + HP15_p42g49 0.71 +0.0 39,875 + HP15_p42g49 0.71 -0.2 39,880 + HP15_p42g49 0.71 +0.0 39,883 - HP15_p42g49 0.71 -1.9 39,941 - HP15_p42g49 0.74 -1.8 40,127 + HP15_p42g49 0.81 +0.1 40,137 + HP15_p42g49 0.81 +0.6 40,144 + HP15_p42g49 0.82 +0.7 40,149 + HP15_p42g49 0.82 +1.7 40,160 + HP15_p42g49 0.82 -1.4 40,160 + HP15_p42g49 0.82 +0.5 40,162 + HP15_p42g49 0.82 -0.4 40,162 - HP15_p42g49 0.82 +1.7 40,168 - HP15_p42g49 0.83 +0.8 40,168 - HP15_p42g49 0.83 +0.7 40,170 - HP15_p42g49 0.83 -1.2 40,178 - HP15_p42g49 0.83 +0.4 40,222 + HP15_p42g49 0.85 -0.2 40,276 + HP15_p42g49 0.87 +0.9 40,283 + HP15_p42g49 0.87 -0.3 40,316 - HP15_p42g49 0.88 +3.2 40,318 + HP15_p42g49 0.89 -0.0 40,365 - -1.6 40,388 + +1.5 40,407 + +0.2 40,431 + -1.1 40,431 + +0.0 40,439 - +0.1 40,439 - -0.6 40,439 - +0.5 40,444 + +2.1 40,694 + HP15_p42g50 0.71 +0.4 40,717 - HP15_p42g50 0.89 -0.7 40,717 - HP15_p42g50 0.89 -0.4 40,717 - HP15_p42g50 0.89 -1.4 40,753 + +0.4 40,763 + +0.3 40,763 + +0.2 40,778 + +2.3 40,778 + -0.4 40,786 - +1.7 40,786 - -0.5 40,826 + +1.7 40,826 + +0.4 40,828 + +1.4 40,836 + -1.0 40,893 + +2.0 40,893 - -1.6 40,924 - +0.8 40,959 + +1.4 40,967 - HP15_p42g51 0.11 -0.9 40,980 - HP15_p42g51 0.14 +1.6 41,021 + HP15_p42g51 0.24 +0.8 41,055 + HP15_p42g51 0.32 -0.3 41,099 + HP15_p42g51 0.42 -2.8 41,114 + HP15_p42g51 0.46 +0.2 41,163 - HP15_p42g51 0.57 +0.4 41,164 + HP15_p42g51 0.58 -0.1 41,164 + HP15_p42g51 0.58 +0.1 41,164 + HP15_p42g51 0.58 +0.4 41,164 + HP15_p42g51 0.58 -0.8 41,169 + HP15_p42g51 0.59 +0.8 41,172 - HP15_p42g51 0.59 -0.2 41,172 - HP15_p42g51 0.59 +0.3 41,215 + HP15_p42g51 0.69 +1.5 41,223 - HP15_p42g51 0.71 +0.7 41,249 + HP15_p42g51 0.77 +1.2 41,249 - HP15_p42g51 0.77 +1.4 41,259 - HP15_p42g51 0.80 -0.3 41,265 + HP15_p42g51 0.81 -0.2 41,287 + HP15_p42g51 0.86 -0.4 41,287 + HP15_p42g51 0.86 +1.9 41,287 + HP15_p42g51 0.86 +1.8 41,292 + HP15_p42g51 0.88 +0.3 41,292 + HP15_p42g51 0.88 -1.4 41,295 - HP15_p42g51 0.88 +1.0 41,295 - HP15_p42g51 0.88 +0.7 41,295 - HP15_p42g51 0.88 -0.5 41,295 - HP15_p42g51 0.88 +0.4 41,295 - HP15_p42g51 0.88 +0.8 41,295 - HP15_p42g51 0.88 +1.0 41,295 - HP15_p42g51 0.88 +1.9 41,295 - HP15_p42g51 0.88 +1.5 41,310 + +0.0 41,319 - +0.8 41,334 - -0.0 41,388 + +2.1 41,388 + +0.9 41,396 - +1.5 41,396 - +0.3 41,422 - -0.4 41,464 + +0.3 41,469 + HP15_p42g52 0.10 +2.0 41,547 + HP15_p42g52 0.18 -1.3 41,547 + HP15_p42g52 0.18 +2.1 41,552 + HP15_p42g52 0.19 +0.2 41,557 + HP15_p42g52 0.19 +0.8 41,625 + HP15_p42g52 0.27 +0.5 41,625 + HP15_p42g52 0.27 +0.5 41,625 + HP15_p42g52 0.27 +0.7 41,660 + HP15_p42g52 0.30 +1.3 41,660 + HP15_p42g52 0.30 +2.1 41,660 + HP15_p42g52 0.30 -0.6 41,660 + HP15_p42g52 0.30 +2.8 41,671 + HP15_p42g52 0.31 -0.0 41,714 + HP15_p42g52 0.36 -0.1 41,714 + HP15_p42g52 0.36 +1.2 41,714 + HP15_p42g52 0.36 +1.3 41,714 + HP15_p42g52 0.36 +1.5 41,714 + HP15_p42g52 0.36 -0.9 41,725 + HP15_p42g52 0.37 -0.9
Or see this region's nucleotide sequence