Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p42g7 and HP15_p42g8 overlap by 8 nucleotides HP15_p42g8 and HP15_p42g9 are separated by 106 nucleotides HP15_p42g9 and HP15_p42g10 are separated by 132 nucleotides HP15_p42g10 and HP15_p42g11 are separated by 94 nucleotides HP15_p42g11 and HP15_p42g12 overlap by 1 nucleotides
HP15_p42g7: HP15_p42g7 - klcB-like protein, at 4,866 to 5,933
_p42g7
HP15_p42g8: HP15_p42g8 - transcriptional repressor korC-like protein, at 5,926 to 6,180
_p42g8
HP15_p42g9: HP15_p42g9 - kleC-like protein, at 6,287 to 6,568
_p42g9
HP15_p42g10: HP15_p42g10 - KleE protein, at 6,701 to 7,051
_p42g10
HP15_p42g11: HP15_p42g11 - transcriptional repressor protein KorA, at 7,146 to 7,466
_p42g11
HP15_p42g12: HP15_p42g12 - Cobyrinic acid a,c-diamide synthase, at 7,466 to 8,224
_p42g12
Position (kb) 6
7 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5.322 kb on + strand, within HP15_p42g7 at 5.330 kb on - strand, within HP15_p42g7 at 5.330 kb on - strand, within HP15_p42g7 at 5.386 kb on - strand, within HP15_p42g7 at 5.464 kb on - strand, within HP15_p42g7 at 5.477 kb on - strand, within HP15_p42g7 at 5.478 kb on - strand, within HP15_p42g7 at 5.478 kb on - strand, within HP15_p42g7 at 5.495 kb on - strand, within HP15_p42g7 at 5.496 kb on + strand, within HP15_p42g7 at 5.516 kb on - strand, within HP15_p42g7 at 5.641 kb on - strand, within HP15_p42g7 at 5.641 kb on - strand, within HP15_p42g7 at 5.675 kb on + strand, within HP15_p42g7 at 5.683 kb on - strand, within HP15_p42g7 at 5.683 kb on - strand, within HP15_p42g7 at 5.683 kb on - strand, within HP15_p42g7 at 5.683 kb on - strand, within HP15_p42g7 at 5.683 kb on - strand, within HP15_p42g7 at 5.683 kb on - strand, within HP15_p42g7 at 5.683 kb on - strand, within HP15_p42g7 at 5.683 kb on - strand, within HP15_p42g7 at 5.732 kb on + strand, within HP15_p42g7 at 5.740 kb on - strand, within HP15_p42g7 at 5.768 kb on + strand, within HP15_p42g7 at 5.776 kb on + strand, within HP15_p42g7 at 5.784 kb on - strand, within HP15_p42g7 at 5.784 kb on - strand, within HP15_p42g7 at 5.805 kb on - strand, within HP15_p42g7 at 5.831 kb on - strand at 5.852 kb on - strand at 5.863 kb on - strand at 5.881 kb on + strand at 5.881 kb on - strand at 5.882 kb on - strand at 5.909 kb on - strand at 6.182 kb on - strand at 6.313 kb on - strand at 6.319 kb on - strand, within HP15_p42g9 at 6.442 kb on - strand, within HP15_p42g9 at 6.700 kb on - strand at 6.781 kb on + strand, within HP15_p42g10 at 6.880 kb on - strand, within HP15_p42g10 at 6.946 kb on - strand, within HP15_p42g10 at 6.979 kb on - strand, within HP15_p42g10 at 7.517 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 5,322 + HP15_p42g7 0.43 -2.0 5,330 - HP15_p42g7 0.43 -1.0 5,330 - HP15_p42g7 0.43 +1.2 5,386 - HP15_p42g7 0.49 -1.0 5,464 - HP15_p42g7 0.56 +1.2 5,477 - HP15_p42g7 0.57 -0.3 5,478 - HP15_p42g7 0.57 -0.8 5,478 - HP15_p42g7 0.57 -1.2 5,495 - HP15_p42g7 0.59 -0.9 5,496 + HP15_p42g7 0.59 -4.1 5,516 - HP15_p42g7 0.61 -0.3 5,641 - HP15_p42g7 0.73 +0.1 5,641 - HP15_p42g7 0.73 -0.7 5,675 + HP15_p42g7 0.76 -3.7 5,683 - HP15_p42g7 0.76 -1.0 5,683 - HP15_p42g7 0.76 +0.5 5,683 - HP15_p42g7 0.76 -1.4 5,683 - HP15_p42g7 0.76 -0.3 5,683 - HP15_p42g7 0.76 -1.1 5,683 - HP15_p42g7 0.76 -0.9 5,683 - HP15_p42g7 0.76 +2.1 5,683 - HP15_p42g7 0.76 +1.0 5,732 + HP15_p42g7 0.81 -3.1 5,740 - HP15_p42g7 0.82 +1.9 5,768 + HP15_p42g7 0.84 -1.8 5,776 + HP15_p42g7 0.85 -3.6 5,784 - HP15_p42g7 0.86 -0.1 5,784 - HP15_p42g7 0.86 +0.6 5,805 - HP15_p42g7 0.88 +1.1 5,831 - -2.0 5,852 - -0.7 5,863 - +0.7 5,881 + -4.7 5,881 - -0.0 5,882 - -0.7 5,909 - +1.6 6,182 - -1.9 6,313 - -0.3 6,319 - HP15_p42g9 0.11 +2.5 6,442 - HP15_p42g9 0.55 +0.0 6,700 - +0.4 6,781 + HP15_p42g10 0.23 -1.6 6,880 - HP15_p42g10 0.51 -0.2 6,946 - HP15_p42g10 0.70 +0.1 6,979 - HP15_p42g10 0.79 +1.9 7,517 + -1.1
Or see this region's nucleotide sequence