Strain Fitness in Marinobacter adhaerens HP15 around HP15_4179
Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | monoculture; Experiment C, time point 6 |
---|---|---|---|---|---|
remove | |||||
4,418,450 | - | HP15_4178 | 0.19 | +0.1 | |
4,418,461 | - | HP15_4178 | 0.21 | +2.3 | |
4,418,595 | - | HP15_4178 | 0.35 | +1.1 | |
4,418,710 | + | HP15_4178 | 0.48 | +2.0 | |
4,418,813 | + | HP15_4178 | 0.59 | -1.1 | |
4,418,952 | - | HP15_4178 | 0.74 | -0.7 | |
4,419,061 | - | HP15_4178 | 0.86 | -0.4 | |
4,419,574 | + | HP15_4179 | 0.20 | +1.1 | |
4,419,591 | - | HP15_4179 | 0.20 | -0.0 | |
4,420,064 | - | HP15_4179 | 0.44 | +1.2 | |
4,420,372 | + | HP15_4179 | 0.60 | +0.3 | |
4,420,485 | + | HP15_4179 | 0.65 | +1.7 | |
4,420,773 | + | HP15_4179 | 0.80 | -1.1 | |
4,420,971 | - | HP15_4179 | 0.90 | -1.8 | |
4,421,063 | + | -0.8 | |||
4,421,068 | + | -0.2 | |||
4,421,451 | + | HP15_4180 | 0.38 | +0.7 | |
4,421,643 | + | HP15_4180 | 0.65 | +3.8 | |
4,421,643 | + | HP15_4180 | 0.65 | -1.9 | |
4,421,668 | - | HP15_4180 | 0.69 | -0.0 | |
4,421,780 | + | HP15_4180 | 0.85 | +2.0 | |
4,421,791 | + | HP15_4180 | 0.86 | +2.2 |
Or see this region's nucleotide sequence