Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3893 and HP15_3894 are separated by 131 nucleotides HP15_3894 and HP15_3895 are separated by 17 nucleotides
HP15_3893: HP15_3893 - amidase family protein, at 4,123,368 to 4,124,867
_3893
HP15_3894: HP15_3894 - conserved hypothetical protein, at 4,124,999 to 4,125,616
_3894
HP15_3895: HP15_3895 - conserved hypothetical protein, membrane, at 4,125,634 to 4,126,701
_3895
Position (kb) 4124
4125
4126 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4124.025 kb on + strand, within HP15_3893 at 4124.025 kb on + strand, within HP15_3893 at 4124.025 kb on - strand, within HP15_3893 at 4124.033 kb on - strand, within HP15_3893 at 4124.073 kb on + strand, within HP15_3893 at 4124.105 kb on + strand, within HP15_3893 at 4124.105 kb on + strand, within HP15_3893 at 4124.113 kb on - strand, within HP15_3893 at 4124.114 kb on - strand, within HP15_3893 at 4124.162 kb on - strand, within HP15_3893 at 4124.171 kb on + strand, within HP15_3893 at 4124.205 kb on + strand, within HP15_3893 at 4124.283 kb on + strand, within HP15_3893 at 4124.283 kb on + strand, within HP15_3893 at 4124.283 kb on + strand, within HP15_3893 at 4124.283 kb on + strand, within HP15_3893 at 4124.291 kb on - strand, within HP15_3893 at 4124.291 kb on - strand, within HP15_3893 at 4124.416 kb on - strand, within HP15_3893 at 4124.481 kb on - strand, within HP15_3893 at 4124.494 kb on + strand, within HP15_3893 at 4124.518 kb on + strand, within HP15_3893 at 4124.739 kb on + strand at 4124.810 kb on + strand at 4125.041 kb on - strand at 4125.049 kb on + strand at 4125.094 kb on - strand, within HP15_3894 at 4125.094 kb on - strand, within HP15_3894 at 4125.176 kb on + strand, within HP15_3894 at 4125.214 kb on - strand, within HP15_3894 at 4125.261 kb on - strand, within HP15_3894 at 4125.308 kb on - strand, within HP15_3894 at 4125.320 kb on + strand, within HP15_3894 at 4125.383 kb on - strand, within HP15_3894 at 4125.477 kb on + strand, within HP15_3894 at 4125.526 kb on + strand, within HP15_3894 at 4125.576 kb on + strand at 4125.610 kb on + strand at 4125.610 kb on + strand at 4125.637 kb on + strand at 4125.637 kb on + strand at 4125.637 kb on + strand at 4125.645 kb on - strand at 4125.645 kb on - strand at 4125.654 kb on + strand at 4125.657 kb on - strand at 4125.659 kb on + strand at 4125.659 kb on + strand at 4125.659 kb on + strand at 4125.659 kb on + strand at 4125.667 kb on - strand at 4125.737 kb on + strand at 4125.750 kb on - strand, within HP15_3895 at 4125.794 kb on - strand, within HP15_3895 at 4125.807 kb on - strand, within HP15_3895 at 4125.969 kb on + strand, within HP15_3895 at 4125.984 kb on + strand, within HP15_3895 at 4126.023 kb on + strand, within HP15_3895 at 4126.037 kb on - strand, within HP15_3895 at 4126.054 kb on + strand, within HP15_3895 at 4126.179 kb on + strand, within HP15_3895 at 4126.189 kb on + strand, within HP15_3895 at 4126.209 kb on - strand, within HP15_3895 at 4126.306 kb on + strand, within HP15_3895 at 4126.383 kb on - strand, within HP15_3895 at 4126.411 kb on - strand, within HP15_3895 at 4126.438 kb on - strand, within HP15_3895 at 4126.565 kb on - strand, within HP15_3895 at 4126.597 kb on + strand at 4126.608 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 4,124,025 + HP15_3893 0.44 -0.3 4,124,025 + HP15_3893 0.44 +0.4 4,124,025 - HP15_3893 0.44 -0.0 4,124,033 - HP15_3893 0.44 +1.4 4,124,073 + HP15_3893 0.47 +0.3 4,124,105 + HP15_3893 0.49 -1.4 4,124,105 + HP15_3893 0.49 -2.7 4,124,113 - HP15_3893 0.50 +0.3 4,124,114 - HP15_3893 0.50 -1.1 4,124,162 - HP15_3893 0.53 +0.9 4,124,171 + HP15_3893 0.54 -0.1 4,124,205 + HP15_3893 0.56 -0.1 4,124,283 + HP15_3893 0.61 +1.4 4,124,283 + HP15_3893 0.61 -0.5 4,124,283 + HP15_3893 0.61 +2.0 4,124,283 + HP15_3893 0.61 -1.1 4,124,291 - HP15_3893 0.62 +1.2 4,124,291 - HP15_3893 0.62 -0.1 4,124,416 - HP15_3893 0.70 -1.2 4,124,481 - HP15_3893 0.74 -0.1 4,124,494 + HP15_3893 0.75 -0.9 4,124,518 + HP15_3893 0.77 -0.5 4,124,739 + -0.6 4,124,810 + +2.7 4,125,041 - +1.0 4,125,049 + +3.0 4,125,094 - HP15_3894 0.15 +1.1 4,125,094 - HP15_3894 0.15 -0.6 4,125,176 + HP15_3894 0.29 +0.3 4,125,214 - HP15_3894 0.35 +1.6 4,125,261 - HP15_3894 0.42 +3.0 4,125,308 - HP15_3894 0.50 +1.3 4,125,320 + HP15_3894 0.52 +1.6 4,125,383 - HP15_3894 0.62 +2.2 4,125,477 + HP15_3894 0.77 +0.6 4,125,526 + HP15_3894 0.85 +0.8 4,125,576 + -0.3 4,125,610 + +0.1 4,125,610 + -0.7 4,125,637 + -4.0 4,125,637 + +1.3 4,125,637 + +0.1 4,125,645 - -1.2 4,125,645 - -1.9 4,125,654 + -1.4 4,125,657 - -0.7 4,125,659 + +0.3 4,125,659 + -0.6 4,125,659 + +0.5 4,125,659 + +0.2 4,125,667 - +0.3 4,125,737 + -2.1 4,125,750 - HP15_3895 0.11 -2.1 4,125,794 - HP15_3895 0.15 -0.2 4,125,807 - HP15_3895 0.16 -0.1 4,125,969 + HP15_3895 0.31 -1.3 4,125,984 + HP15_3895 0.33 +1.2 4,126,023 + HP15_3895 0.36 -1.6 4,126,037 - HP15_3895 0.38 +1.3 4,126,054 + HP15_3895 0.39 +1.3 4,126,179 + HP15_3895 0.51 +1.2 4,126,189 + HP15_3895 0.52 -0.4 4,126,209 - HP15_3895 0.54 +0.6 4,126,306 + HP15_3895 0.63 +1.4 4,126,383 - HP15_3895 0.70 -0.5 4,126,411 - HP15_3895 0.73 +0.7 4,126,438 - HP15_3895 0.75 -0.5 4,126,565 - HP15_3895 0.87 +1.3 4,126,597 + +1.6 4,126,608 - -0.8
Or see this region's nucleotide sequence