Strain Fitness in Marinobacter adhaerens HP15 around HP15_3893

Experiment: monoculture; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3892 and HP15_3893 are separated by 40 nucleotidesHP15_3893 and HP15_3894 are separated by 131 nucleotidesHP15_3894 and HP15_3895 are separated by 17 nucleotides HP15_3892: HP15_3892 - conserved hypothetical protein, secreted, at 4,122,188 to 4,123,327 _3892 HP15_3893: HP15_3893 - amidase family protein, at 4,123,368 to 4,124,867 _3893 HP15_3894: HP15_3894 - conserved hypothetical protein, at 4,124,999 to 4,125,616 _3894 HP15_3895: HP15_3895 - conserved hypothetical protein, membrane, at 4,125,634 to 4,126,701 _3895 Position (kb) 4123 4124 4125Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4122.506 kb on + strand, within HP15_3892at 4122.578 kb on - strand, within HP15_3892at 4122.612 kb on + strand, within HP15_3892at 4122.620 kb on + strand, within HP15_3892at 4122.742 kb on - strand, within HP15_3892at 4122.743 kb on - strand, within HP15_3892at 4122.755 kb on + strand, within HP15_3892at 4122.803 kb on + strand, within HP15_3892at 4122.816 kb on + strand, within HP15_3892at 4122.857 kb on - strand, within HP15_3892at 4122.960 kb on - strand, within HP15_3892at 4122.974 kb on + strand, within HP15_3892at 4122.978 kb on + strand, within HP15_3892at 4122.982 kb on - strand, within HP15_3892at 4123.000 kb on - strand, within HP15_3892at 4123.014 kb on + strand, within HP15_3892at 4123.204 kb on - strand, within HP15_3892at 4123.211 kb on + strand, within HP15_3892at 4123.219 kb on - strandat 4123.553 kb on - strand, within HP15_3893at 4123.555 kb on + strand, within HP15_3893at 4123.783 kb on - strand, within HP15_3893at 4123.793 kb on + strand, within HP15_3893at 4123.803 kb on + strand, within HP15_3893at 4124.025 kb on + strand, within HP15_3893at 4124.025 kb on + strand, within HP15_3893at 4124.025 kb on - strand, within HP15_3893at 4124.033 kb on - strand, within HP15_3893at 4124.073 kb on + strand, within HP15_3893at 4124.105 kb on + strand, within HP15_3893at 4124.105 kb on + strand, within HP15_3893at 4124.113 kb on - strand, within HP15_3893at 4124.114 kb on - strand, within HP15_3893at 4124.162 kb on - strand, within HP15_3893at 4124.171 kb on + strand, within HP15_3893at 4124.205 kb on + strand, within HP15_3893at 4124.283 kb on + strand, within HP15_3893at 4124.283 kb on + strand, within HP15_3893at 4124.283 kb on + strand, within HP15_3893at 4124.283 kb on + strand, within HP15_3893at 4124.291 kb on - strand, within HP15_3893at 4124.291 kb on - strand, within HP15_3893at 4124.416 kb on - strand, within HP15_3893at 4124.481 kb on - strand, within HP15_3893at 4124.494 kb on + strand, within HP15_3893at 4124.518 kb on + strand, within HP15_3893at 4124.739 kb on + strandat 4124.810 kb on + strandat 4125.041 kb on - strandat 4125.049 kb on + strandat 4125.094 kb on - strand, within HP15_3894at 4125.094 kb on - strand, within HP15_3894at 4125.176 kb on + strand, within HP15_3894at 4125.214 kb on - strand, within HP15_3894at 4125.261 kb on - strand, within HP15_3894at 4125.308 kb on - strand, within HP15_3894at 4125.320 kb on + strand, within HP15_3894at 4125.383 kb on - strand, within HP15_3894at 4125.477 kb on + strand, within HP15_3894at 4125.526 kb on + strand, within HP15_3894at 4125.576 kb on + strandat 4125.610 kb on + strandat 4125.610 kb on + strandat 4125.637 kb on + strandat 4125.637 kb on + strandat 4125.637 kb on + strandat 4125.645 kb on - strandat 4125.645 kb on - strandat 4125.654 kb on + strandat 4125.657 kb on - strandat 4125.659 kb on + strandat 4125.659 kb on + strandat 4125.659 kb on + strandat 4125.659 kb on + strandat 4125.667 kb on - strandat 4125.737 kb on + strandat 4125.750 kb on - strand, within HP15_3895at 4125.794 kb on - strand, within HP15_3895at 4125.807 kb on - strand, within HP15_3895

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6
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4,122,506 + HP15_3892 0.28 -2.0
4,122,578 - HP15_3892 0.34 -1.3
4,122,612 + HP15_3892 0.37 -1.0
4,122,620 + HP15_3892 0.38 -0.2
4,122,742 - HP15_3892 0.49 -1.6
4,122,743 - HP15_3892 0.49 -1.1
4,122,755 + HP15_3892 0.50 -0.8
4,122,803 + HP15_3892 0.54 -0.4
4,122,816 + HP15_3892 0.55 -1.4
4,122,857 - HP15_3892 0.59 -1.2
4,122,960 - HP15_3892 0.68 -1.4
4,122,974 + HP15_3892 0.69 +0.8
4,122,978 + HP15_3892 0.69 +1.0
4,122,982 - HP15_3892 0.70 +0.4
4,123,000 - HP15_3892 0.71 -0.9
4,123,014 + HP15_3892 0.72 -0.4
4,123,204 - HP15_3892 0.89 +1.3
4,123,211 + HP15_3892 0.90 -0.2
4,123,219 - +1.1
4,123,553 - HP15_3893 0.12 +1.0
4,123,555 + HP15_3893 0.12 +0.5
4,123,783 - HP15_3893 0.28 -0.2
4,123,793 + HP15_3893 0.28 -0.4
4,123,803 + HP15_3893 0.29 -0.3
4,124,025 + HP15_3893 0.44 -0.3
4,124,025 + HP15_3893 0.44 +0.4
4,124,025 - HP15_3893 0.44 -0.0
4,124,033 - HP15_3893 0.44 +1.4
4,124,073 + HP15_3893 0.47 +0.3
4,124,105 + HP15_3893 0.49 -1.4
4,124,105 + HP15_3893 0.49 -2.7
4,124,113 - HP15_3893 0.50 +0.3
4,124,114 - HP15_3893 0.50 -1.1
4,124,162 - HP15_3893 0.53 +0.9
4,124,171 + HP15_3893 0.54 -0.1
4,124,205 + HP15_3893 0.56 -0.1
4,124,283 + HP15_3893 0.61 +1.4
4,124,283 + HP15_3893 0.61 -0.5
4,124,283 + HP15_3893 0.61 +2.0
4,124,283 + HP15_3893 0.61 -1.1
4,124,291 - HP15_3893 0.62 +1.2
4,124,291 - HP15_3893 0.62 -0.1
4,124,416 - HP15_3893 0.70 -1.2
4,124,481 - HP15_3893 0.74 -0.1
4,124,494 + HP15_3893 0.75 -0.9
4,124,518 + HP15_3893 0.77 -0.5
4,124,739 + -0.6
4,124,810 + +2.7
4,125,041 - +1.0
4,125,049 + +3.0
4,125,094 - HP15_3894 0.15 +1.1
4,125,094 - HP15_3894 0.15 -0.6
4,125,176 + HP15_3894 0.29 +0.3
4,125,214 - HP15_3894 0.35 +1.6
4,125,261 - HP15_3894 0.42 +3.0
4,125,308 - HP15_3894 0.50 +1.3
4,125,320 + HP15_3894 0.52 +1.6
4,125,383 - HP15_3894 0.62 +2.2
4,125,477 + HP15_3894 0.77 +0.6
4,125,526 + HP15_3894 0.85 +0.8
4,125,576 + -0.3
4,125,610 + +0.1
4,125,610 + -0.7
4,125,637 + -4.0
4,125,637 + +1.3
4,125,637 + +0.1
4,125,645 - -1.2
4,125,645 - -1.9
4,125,654 + -1.4
4,125,657 - -0.7
4,125,659 + +0.3
4,125,659 + -0.6
4,125,659 + +0.5
4,125,659 + +0.2
4,125,667 - +0.3
4,125,737 + -2.1
4,125,750 - HP15_3895 0.11 -2.1
4,125,794 - HP15_3895 0.15 -0.2
4,125,807 - HP15_3895 0.16 -0.1

Or see this region's nucleotide sequence