Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3619 and HP15_3620 are separated by 259 nucleotides HP15_3620 and HP15_3621 overlap by 20 nucleotides HP15_3621 and HP15_3622 are separated by 77 nucleotides HP15_3622 and HP15_3623 overlap by 14 nucleotides HP15_3623 and HP15_3624 are separated by 68 nucleotides
HP15_3619: HP15_3619 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 3,815,372 to 3,816,958
_3619
HP15_3620: HP15_3620 - conserved hypothetical protein, at 3,817,218 to 3,817,973
_3620
HP15_3621: HP15_3621 - antioxidant, AhpC/Tsa family protein, at 3,817,954 to 3,818,430
_3621
HP15_3622: HP15_3622 - peroxiredoxin, at 3,818,508 to 3,819,071
_3622
HP15_3623: HP15_3623 - hypothetical protein, at 3,819,058 to 3,819,165
_3623
HP15_3624: HP15_3624 - transporter, BCCT family protein, at 3,819,234 to 3,820,451
_3624
Position (kb)
3817
3818
3819 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3816.964 kb on + strand at 3817.161 kb on + strand at 3817.229 kb on - strand at 3817.327 kb on + strand, within HP15_3620 at 3817.439 kb on - strand, within HP15_3620 at 3817.456 kb on - strand, within HP15_3620 at 3817.482 kb on - strand, within HP15_3620 at 3817.526 kb on - strand, within HP15_3620 at 3817.666 kb on - strand, within HP15_3620 at 3817.666 kb on - strand, within HP15_3620 at 3817.686 kb on - strand, within HP15_3620 at 3817.691 kb on - strand, within HP15_3620 at 3817.699 kb on + strand, within HP15_3620 at 3817.709 kb on + strand, within HP15_3620 at 3817.717 kb on - strand, within HP15_3620 at 3817.717 kb on - strand, within HP15_3620 at 3817.717 kb on - strand, within HP15_3620 at 3817.743 kb on - strand, within HP15_3620 at 3817.746 kb on - strand, within HP15_3620 at 3817.944 kb on + strand at 3817.952 kb on - strand at 3817.969 kb on + strand at 3817.970 kb on + strand at 3818.062 kb on + strand, within HP15_3621 at 3818.097 kb on + strand, within HP15_3621 at 3818.097 kb on - strand, within HP15_3621 at 3818.328 kb on + strand, within HP15_3621 at 3818.328 kb on + strand, within HP15_3621 at 3818.375 kb on - strand, within HP15_3621 at 3818.506 kb on + strand at 3818.506 kb on + strand at 3818.506 kb on + strand at 3818.514 kb on - strand at 3818.533 kb on - strand at 3818.678 kb on + strand, within HP15_3622 at 3818.678 kb on + strand, within HP15_3622 at 3818.678 kb on + strand, within HP15_3622 at 3818.686 kb on - strand, within HP15_3622 at 3818.723 kb on + strand, within HP15_3622 at 3818.724 kb on + strand, within HP15_3622 at 3818.980 kb on + strand, within HP15_3622 at 3818.995 kb on + strand, within HP15_3622 at 3819.003 kb on - strand, within HP15_3622 at 3819.101 kb on + strand, within HP15_3623 at 3819.231 kb on + strand at 3819.239 kb on - strand at 3819.239 kb on - strand at 3819.239 kb on - strand at 3819.339 kb on + strand at 3819.360 kb on - strand, within HP15_3624 at 3819.416 kb on - strand, within HP15_3624
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 3,816,964 + +0.7 3,817,161 + +1.1 3,817,229 - +2.0 3,817,327 + HP15_3620 0.14 +1.7 3,817,439 - HP15_3620 0.29 -0.5 3,817,456 - HP15_3620 0.31 +0.6 3,817,482 - HP15_3620 0.35 -0.5 3,817,526 - HP15_3620 0.41 -0.7 3,817,666 - HP15_3620 0.59 -0.3 3,817,666 - HP15_3620 0.59 -1.6 3,817,686 - HP15_3620 0.62 -1.0 3,817,691 - HP15_3620 0.63 -1.0 3,817,699 + HP15_3620 0.64 -0.8 3,817,709 + HP15_3620 0.65 +1.0 3,817,717 - HP15_3620 0.66 -1.0 3,817,717 - HP15_3620 0.66 -1.0 3,817,717 - HP15_3620 0.66 -0.8 3,817,743 - HP15_3620 0.69 +1.7 3,817,746 - HP15_3620 0.70 -0.1 3,817,944 + +0.7 3,817,952 - +1.5 3,817,969 + +1.9 3,817,970 + +0.5 3,818,062 + HP15_3621 0.23 -0.9 3,818,097 + HP15_3621 0.30 +1.3 3,818,097 - HP15_3621 0.30 +2.7 3,818,328 + HP15_3621 0.78 -0.8 3,818,328 + HP15_3621 0.78 -3.1 3,818,375 - HP15_3621 0.88 +1.5 3,818,506 + -0.1 3,818,506 + +1.3 3,818,506 + +2.5 3,818,514 - +2.1 3,818,533 - +0.1 3,818,678 + HP15_3622 0.30 +1.0 3,818,678 + HP15_3622 0.30 -2.4 3,818,678 + HP15_3622 0.30 +1.4 3,818,686 - HP15_3622 0.32 -1.0 3,818,723 + HP15_3622 0.38 +0.2 3,818,724 + HP15_3622 0.38 -1.6 3,818,980 + HP15_3622 0.84 +2.5 3,818,995 + HP15_3622 0.86 +2.8 3,819,003 - HP15_3622 0.88 -3.3 3,819,101 + HP15_3623 0.40 +0.4 3,819,231 + -0.6 3,819,239 - -1.3 3,819,239 - +1.6 3,819,239 - +0.3 3,819,339 + +1.5 3,819,360 - HP15_3624 0.10 -2.5 3,819,416 - HP15_3624 0.15 -0.0
Or see this region's nucleotide sequence