Strain Fitness in Marinobacter adhaerens HP15 around HP15_3521

Experiment: monoculture; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3519 and HP15_3520 are separated by 11 nucleotidesHP15_3520 and HP15_3521 are separated by 73 nucleotidesHP15_3521 and HP15_3522 overlap by 8 nucleotidesHP15_3522 and HP15_3523 overlap by 14 nucleotides HP15_3519: HP15_3519 - CheB methylesterase, at 3,708,128 to 3,709,180 _3519 HP15_3520: HP15_3520 - protein containing CheW-like domain, at 3,709,192 to 3,709,653 _3520 HP15_3521: HP15_3521 - zinc uptake regulation protein, at 3,709,727 to 3,710,218 _3521 HP15_3522: HP15_3522 - zinc import ATP-binding protein znuC, at 3,710,211 to 3,710,978 _3522 HP15_3523: HP15_3523 - zinc ABC transporter, permease protein, at 3,710,965 to 3,711,777 _3523 Position (kb) 3709 3710 3711Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3708.788 kb on - strand, within HP15_3519at 3708.873 kb on + strand, within HP15_3519at 3708.918 kb on + strand, within HP15_3519at 3708.926 kb on - strand, within HP15_3519at 3709.022 kb on - strand, within HP15_3519at 3709.203 kb on + strandat 3709.257 kb on + strand, within HP15_3520at 3709.499 kb on + strand, within HP15_3520at 3709.932 kb on - strand, within HP15_3521at 3710.097 kb on + strand, within HP15_3521at 3710.097 kb on + strand, within HP15_3521at 3710.105 kb on - strand, within HP15_3521at 3710.105 kb on - strand, within HP15_3521at 3710.109 kb on + strand, within HP15_3521at 3710.759 kb on + strand, within HP15_3522at 3710.914 kb on + strandat 3710.922 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6
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3,708,788 - HP15_3519 0.63 +1.5
3,708,873 + HP15_3519 0.71 -1.1
3,708,918 + HP15_3519 0.75 +1.4
3,708,926 - HP15_3519 0.76 +1.1
3,709,022 - HP15_3519 0.85 -3.5
3,709,203 + -1.0
3,709,257 + HP15_3520 0.14 +0.8
3,709,499 + HP15_3520 0.66 +3.9
3,709,932 - HP15_3521 0.42 -1.2
3,710,097 + HP15_3521 0.75 -2.4
3,710,097 + HP15_3521 0.75 -0.9
3,710,105 - HP15_3521 0.77 -3.6
3,710,105 - HP15_3521 0.77 -3.5
3,710,109 + HP15_3521 0.78 -4.5
3,710,759 + HP15_3522 0.71 -1.5
3,710,914 + -1.5
3,710,922 - -1.0

Or see this region's nucleotide sequence