Strain Fitness in Marinobacter adhaerens HP15 around HP15_3499
Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | monoculture; Experiment C, time point 6 |
---|---|---|---|---|---|
remove | |||||
3,683,584 | + | +0.1 | |||
3,683,659 | - | +0.2 | |||
3,683,669 | - | -0.6 | |||
3,683,745 | - | HP15_3499 | 0.24 | -0.5 | |
3,683,766 | + | HP15_3499 | 0.32 | -0.2 | |
3,684,084 | + | +0.2 | |||
3,684,086 | + | +1.6 | |||
3,684,125 | + | HP15_3500 | 0.12 | +2.4 | |
3,684,200 | + | HP15_3500 | 0.19 | +2.1 | |
3,684,208 | - | HP15_3500 | 0.20 | -0.4 | |
3,684,208 | - | HP15_3500 | 0.20 | -1.5 | |
3,684,215 | + | HP15_3500 | 0.21 | +1.3 | |
3,684,229 | + | HP15_3500 | 0.22 | -0.6 | |
3,684,232 | - | HP15_3500 | 0.22 | -0.8 | |
3,684,234 | + | HP15_3500 | 0.23 | +1.8 | |
3,684,237 | - | HP15_3500 | 0.23 | -0.0 | |
3,684,237 | - | HP15_3500 | 0.23 | -2.1 | |
3,684,242 | - | HP15_3500 | 0.23 | +1.7 | |
3,684,386 | + | HP15_3500 | 0.37 | +1.5 | |
3,684,416 | - | HP15_3500 | 0.40 | +2.6 | |
3,684,436 | - | HP15_3500 | 0.42 | -0.0 | |
3,684,448 | + | HP15_3500 | 0.43 | -0.1 | |
3,684,453 | + | HP15_3500 | 0.44 | +0.9 | |
3,684,461 | - | HP15_3500 | 0.44 | -1.2 | |
3,684,703 | + | HP15_3500 | 0.68 | -0.6 | |
3,684,705 | - | HP15_3500 | 0.68 | +2.4 | |
3,684,716 | + | HP15_3500 | 0.69 | -0.3 | |
3,684,860 | + | HP15_3500 | 0.83 | -0.1 | |
3,684,885 | - | HP15_3500 | 0.85 | +1.3 |
Or see this region's nucleotide sequence